Oxfold: kinetic folding of RNA using stochastic context-free grammars and evolutionary information.

MOTIVATION:Many computational methods for RNA secondary structure prediction, and, in particular, for the prediction of a consensus structure of an alignment of RNA sequences, have been developed. Most methods, however, ignore biophysical factors, such as the kinetics of RNA folding; no current impl...

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Main Authors: Anderson, JWJ, Haas, PA, Mathieson, L-A, Volynkin, V, Lyngsø, R, Tataru, P, Hein, J
格式: Journal article
語言:English
出版: Oxford University Press (OUP) 2013