Hash-based core genome multilocus sequencing typing for Clostridium difficile

Hash-based core genome multilocus sequencing typing for Clostridium difficile

Pathogen whole-genome sequencing has huge potential as a tool to better understand infection transmission. However, rapidly identifying closely related genomes among a background of thousands of other genomes is challenging. Here, we describe a refinement to core genome multilocus sequence typing (c...

Cur síos iomlán

Sonraí bibleagrafaíochta
Príomhchruthaitheoirí:	Eyre, DW, Peto, TEA, Crook, DW, Walker, AS, Wilcox, MH
Formáid:	Journal article
Teanga:	English
Foilsithe / Cruthaithe:	American Society for Microbiology 2019

Míreanna comhchosúla

Multilocus sequence typing of Clostridium difficile.
de réir: Griffiths, D, et al.
Foilsithe / Cruthaithe: (2010)

Comparison of multilocus variable-number tandem-repeat analysis and whole-genome sequencing for investigation of Clostridium difficile transmission.
de réir: Eyre, D, et al.
Foilsithe / Cruthaithe: (2013)

Quantitative study of Clostridium difficile transmission using extensive epidemiological data and whole genome sequencing
de réir: Eyre, DW
Foilsithe / Cruthaithe: (2013)

Regarding "Clostridium difficile ribotype does not predict severe infection".
de réir: Walker, A, et al.
Foilsithe / Cruthaithe: (2013)

Clostridium difficile mixed infection and reinfection.
de réir: Eyre, D, et al.
Foilsithe / Cruthaithe: (2012)

Comparison of control of Clostridium difficile infection in six English hospitals using whole-genome sequencing
de réir: Eyre, D, et al.
Foilsithe / Cruthaithe: (2017)

Risk factors for Clostridium difficile acquisition in infants: importance of study design.
de réir: Stoesser, N, et al.
Foilsithe / Cruthaithe: (2013)

Detection of mixed infection from bacterial whole genome sequence data allows assessment of its role in Clostridium difficile transmission.
de réir: Eyre, D, et al.
Foilsithe / Cruthaithe: (2013)

Detection of mixed infection from bacterial whole genome sequence data allows assessment of its role in Clostridium difficile transmission
de réir: Eyre, D, et al.
Foilsithe / Cruthaithe: (2013)

Whole-genome sequencing demonstrates that fidaxomicin is superior to vancomycin for preventing reinfection and relapse of infection with Clostridium difficile
de réir: Eyre, D, et al.
Foilsithe / Cruthaithe: (2013)

Clostridium difficile in England: can we stop washing our hands? - Authors' reply.
de réir: Eyre, D, et al.
Foilsithe / Cruthaithe: (2017)

Establishment of a publicly available core genome multilocus sequence typing scheme for Clostridium perfringens
de réir: Abdel-Glil, MY, et al.
Foilsithe / Cruthaithe: (2021)

Establishment of a Publicly Available Core Genome Multilocus Sequence Typing Scheme for Clostridium perfringens
de réir: Mostafa Y. Abdel-Glil, et al.
Foilsithe / Cruthaithe: (2021-10-01)

Microevolutionary analysis of Clostridium difficile genomes to investigate transmission.
de réir: Didelot, X, et al.
Foilsithe / Cruthaithe: (2012)

Microevolutionary analysis of Clostridium difficile genomes to investigate transmission
de réir: Didelot, X, et al.
Foilsithe / Cruthaithe: (2012)

Patient and strain characteristics associated with Clostridium difficile transmission and adverse outcomes
de réir: Martin, J, et al.
Foilsithe / Cruthaithe: (2018)

Asymptomatic Clostridium difficile colonisation and onward transmission
de réir: Eyre, D, et al.
Foilsithe / Cruthaithe: (2013)

Evolutionary history of the Clostridium difficile pathogenicity locus.
de réir: Dingle, K, et al.
Foilsithe / Cruthaithe: (2014)

Relationship between bacterial strain type, host biomarkers, and mortality in Clostridium difficile infection.
de réir: Walker, A, et al.
Foilsithe / Cruthaithe: (2013)

Predictors of first recurrence of Clostridium difficile infection: implications for initial management.
de réir: Eyre, D, et al.
Foilsithe / Cruthaithe: (2012)

Short-term genome stability of serial Clostridium difficile ribotype 027 isolates in an experimental gut model and recurrent human disease
de réir: Eyre, D, et al.
Foilsithe / Cruthaithe: (2013)

Contribution to Clostridium difficile transmission of symptomatic patients with toxigenic strains who are fecal toxin negative
de réir: Mawer, D, et al.
Foilsithe / Cruthaithe: (2017)

Detection of mixed infection from bacterial whole genome sequence data allows assessment of its role in Clostridium difficile transmission.
de réir: David W Eyre, et al.
Foilsithe / Cruthaithe: (2013-01-01)

Characterisation of Clostridium difficile hospital ward-based transmission using extensive epidemiological data and molecular typing.
de réir: Walker, A, et al.
Foilsithe / Cruthaithe: (2012)

Recombinational switching of the Clostridium difficile S-layer and a novel glycosylation gene cluster revealed by large-scale whole-genome sequencing.
de réir: Dingle, K, et al.
Foilsithe / Cruthaithe: (2013)

Core-genome multilocus sequence typing and core-SNP analysis of Clostridium neonatale strains isolated in different spatio-temporal settings
de réir: Victoria Mesa, et al.
Foilsithe / Cruthaithe: (2023-12-01)

Asymptomatic Clostridium difficile colonisation and onward transmission.
de réir: David W Eyre, et al.
Foilsithe / Cruthaithe: (2013-01-01)

Fairness of financial penalties to improve control of Clostridium difficile.
de réir: Walker, A, et al.
Foilsithe / Cruthaithe: (2008)

Fairness of financial penalties to improve control of Clostridium difficile.
de réir: Walker, A, et al.
Foilsithe / Cruthaithe: (2008)

Two distinct patterns of Clostridium difficile diversity across Europe indicates contrasting routes of spread
de réir: Eyre, D, et al.
Foilsithe / Cruthaithe: (2018)

Clostridium difficile: Investigating transmission patterns between infected and colonized patients using whole genome sequencing
de réir: Kong, L, et al.
Foilsithe / Cruthaithe: (2018)

Clostridium difficile trehalose metabolism variants are common and not associated with adverse patient outcomes when variably present in the same lineage
de réir: Eyre, D, et al.
Foilsithe / Cruthaithe: (2019)

Molecular epidemiology of Clostridium difficile strains in children compared with that of strains circulating in adults with Clostridium difficile-associated infection.
de réir: Stoesser, N, et al.
Foilsithe / Cruthaithe: (2011)

Penicillin binding protein substitutions co-occur with fluoroquinolone resistance in ‘epidemic’ lineages of multi drug-resistant Clostridioides difficile
de réir: Dingle, K, et al.
Foilsithe / Cruthaithe: (2023)

A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance
de réir: Eyre, D, et al.
Foilsithe / Cruthaithe: (2012)

Clinical Clostridium difficile: clonality and pathogenicity locus diversity.
de réir: Dingle, K, et al.
Foilsithe / Cruthaithe: (2011)

A Core Genome Multilocus Sequence Typing Scheme for Streptococcus mutans
de réir: Shanshan Liu, et al.
Foilsithe / Cruthaithe: (2020-08-01)

A Core Genome Multilocus Sequence Typing Scheme for Pseudomonas aeruginosa
de réir: Romário Oliveira de Sales, et al.
Foilsithe / Cruthaithe: (2020-05-01)

Characterisation of Clostridium difficile hospital ward-based transmission using extensive epidemiological data and molecular typing.
de réir: A Sarah Walker, et al.
Foilsithe / Cruthaithe: (2012-02-01)

Short-term genome stability of serial Clostridium difficile ribotype 027 isolates in an experimental gut model and recurrent human disease.
de réir: David W Eyre, et al.
Foilsithe / Cruthaithe: (2013-01-01)