Introducing improved structural properties and salt dependence into a coarse-grained model of DNA.

We introduce an extended version of oxDNA, a coarse-grained model of deoxyribonucleic acid (DNA) designed to capture the thermodynamic, structural, and mechanical properties of single- and double-stranded DNA. By including explicit major and minor grooves and by slightly modifying the coaxial stacki...

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Bibliographic Details
Main Authors: Snodin, B, Randisi, F, Mosayebi, M, Šulc, P, Schreck, J, Romano, F, Ouldridge, T, Tsukanov, R, Nir, E, Louis, A, Doye, J
Format: Journal article
Language:English
Published: AIP Publishing 2015