Fast and accurate detection of Identical-By-Descent segment sharing in large genomic datasets

Fast and accurate detection of Identical-By-Descent segment sharing in large genomic datasets

<p>Identical-By-Descent (IBD) segments are a fundamental measure of ge- netic relatedness and IBD detection is of great interest in many applica- tions, including demographic inference and haplotype-based association. Algorithms that scale to large datasets (more than 10.000 diploid indi- vidu...

पूर्ण विवरण

ग्रंथसूची विवरण
मुख्य लेखक:	Saada, J
अन्य लेखक:	Palamara, P
स्वरूप:	थीसिस
भाषा:	English
प्रकाशित:	2019
विषय:	Population genetics > Statistical methods

समान संसाधन

Methods for large-scale genome-wide association studies
द्वारा: Kalantzis, G
प्रकाशित: (2022)

RaPID: ultra-fast, powerful, and accurate detection of segments identical by descent (IBD) in biobank-scale cohorts
द्वारा: Ardalan Naseri, और अन्य
प्रकाशित: (2019-07-01)

Scalable approaches to inference and analysis of genome-wide genealogies
द्वारा: Gunnarsson, ÁF
प्रकाशित: (2023)

Blocks identical by descent in the genomes of the indigenous population of Siberia demonstrate genetic links between populations
द्वारा: N. A. Kolesnikov, और अन्य
प्रकाशित: (2023-03-01)

Conflation of Short Identity-by-Descent Segments Bias Their Inferred Length Distribution
द्वारा: Charleston W. K. Chiang, और अन्य
प्रकाशित: (2016-05-01)

Genetic identification of a common collagen disease in Puerto Ricans via identity-by-descent mapping in a health system
द्वारा: Gillian Morven Belbin, और अन्य
प्रकाशित: (2017-09-01)

Current Developments in Detection of Identity-by-Descent Methods and Applications
द्वारा: Evan L. Sticca, और अन्य
प्रकाशित: (2021-09-01)

Rapid detection of identity-by-descent tracts for mega-scale datasets
द्वारा: Ruhollah Shemirani, और अन्य
प्रकाशित: (2021-06-01)

The detection, structure and uses of extended haplotype identity in population genetic data
द्वारा: Xifara, DK
प्रकाशित: (2014)

Statistical HLA type imputation from large and heterogeneous datasets
द्वारा: Dilthey, A
प्रकाशित: (2012)

Rare and low-frequency variants and predisposition to complex disease
द्वारा: Albers, P
प्रकाशित: (2017)

Bayesian and frequentist methods and analyses of genome-wide association studies
द्वारा: Vukcevic, D
प्रकाशित: (2009)

Mirror descent for high-dimensional statistical models
द्वारा: Wu, F
प्रकाशित: (2021)

A genome-wide scan for regions shared identical by descent in Hutterite MS families
द्वारा: Dyment, D, और अन्य
प्रकाशित: (2002)

Octofitter: Fast, Flexible, and Accurate Orbit Modeling to Detect Exoplanets
द्वारा: William Thompson, और अन्य
प्रकाशित: (2023-01-01)

Fast Line Segment Detection and Large Scene Airport Detection for PolSAR
द्वारा: Daochang Wang, और अन्य
प्रकाशित: (2022-11-01)

Leveraging Identity-by-Descent for Accurate Genotype Inference in Family Sequencing Data.
द्वारा: Bingshan Li, और अन्य
प्रकाशित: (2015-06-01)

Estimation of heritability from limited family data using genome-wide identity-by-descent sharing
द्वारा: Ødegård Jørgen, और अन्य
प्रकाशित: (2012-05-01)

A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
द्वारा: Howie, B, और अन्य
प्रकाशित: (2009)

Evaluating mtDNA patterns of genetic isolation using a re-sampling procedure: A case study on Italian populations
द्वारा: Paolo Anagnostou, और अन्य
प्रकाशित: (2017-02-01)

Inferring dated genealogies from modern and ancient genomes
द्वारा: Wohns, AWL
प्रकाशित: (2021)

Comparison of two geo-evolutionary analysis methods using local and cross-border bovine breeds
द्वारा: Áxel Villalobos-Cortés, और अन्य
प्रकाशित: (2017-07-01)

Priors, population sizes, and power in genome-wide hypothesis tests
द्वारा: Jitong Cai, और अन्य
प्रकाशित: (2023-04-01)

Association of the Lactase Persistence Haplotype Block With Disease Risk in Populations of European Descent
द्वारा: Shannon E. K. Joslin, और अन्य
प्रकाशित: (2020-10-01)

Precision of methods for calculating identity-by-descent matrices using multiple markers
द्वारा: Sørensen Anders, और अन्य
प्रकाशित: (2002-09-01)

Assumption-free estimation of heritability from genome-wide identity-by-descent sharing between full siblings.
प्रकाशित: (2006-03-01)

Assumption-free estimation of heritability from genome-wide identity-by-descent sharing between full siblings.
द्वारा: Peter M Visscher, और अन्य
प्रकाशित: (2006-03-01)

Theories of population variation in genes and genomes /
द्वारा: 426765 Christiansen, Freddy Bugge
प्रकाशित: (2008)

Detection of identity by descent using next-generation whole genome sequencing data
द्वारा: Su Shu-Yi, और अन्य
प्रकाशित: (2012-06-01)

New Software for the Fast Estimation of Population Recombination Rates (FastEPRR) in the Genomic Era
द्वारा: Feng Gao, और अन्य
प्रकाशित: (2016-06-01)

Correspondence Between Genomic- and Genealogical/Coalescent-Based Inference of Homozygosity by Descent in Large French-Canadian Genealogies
द्वारा: Kelly M. Burkett, और अन्य
प्रकाशित: (2022-01-01)

Genetic substructure and admixture of Mongolians and Kazakhs inferred from genome-wide array genotyping
द्वारा: Jing Zhao, और अन्य
प्रकाशित: (2020-11-01)

Categories of descent groups in a timor village/
द्वारा: Cunningham, Clark E.

A first stage genome-wide screen for regions shared identical-by-descent in Hutterite families with multiple sclerosis.
द्वारा: Dyment, D, और अन्य
प्रकाशित: (2008)

CATE: A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests on large scale genomic data
द्वारा: Deshan Perera, और अन्य
प्रकाशित: (2023-08-01)

Graphics of large datasets : visualizing a million /
द्वारा: 321851 Unwin, Antony, और अन्य
प्रकाशित: (2006)

Even Modest Prediction Accuracy of Genomic Models Can Have Large Clinical Utility
द्वारा: Emily Jane Dhurandhar, और अन्य
प्रकाशित: (2014-11-01)

A simple and rapid method for calculating identity-by-descent matrices using multiple markers
द्वारा: Woolliams John, और अन्य
प्रकाशित: (2001-09-01)

Maintenance of Complex Trait Variation: Classic Theory and Modern Data
द्वारा: Evan M. Koch, और अन्य
प्रकाशित: (2021-11-01)

Genomic Insight Into the Population Admixture History of Tungusic-Speaking Manchu People in Northeast China
द्वारा: Xianpeng Zhang, और अन्य
प्रकाशित: (2021-09-01)