OSTRFPD: multifunctional tool for genome-wide short tandem repeat analysis for DNA, transcripts, and amino acid sequences with integrated primer designer

OSTRFPD: multifunctional tool for genome-wide short tandem repeat analysis for DNA, transcripts, and amino acid sequences with integrated primer designer

Microsatellite mining is a common outcome of the in silico approach to genomic studies. The resulting short tandemly repeated DNA could be used as molecular markers for studying polymorphism, genotyping and forensics. The omni short tandem repeat finder and primer designer (OSTRFPD) is among the few...

書誌詳細
主要な著者:	Mathema, VB, Dondorp, AM, Imwong, M
フォーマット:	Journal article
言語:	English
出版事項:	SAGE Publications 2019

類似資料

OSTRFPD: Multifunctional Tool for Genome-Wide Short Tandem Repeat Analysis for DNA, Transcripts, and Amino Acid Sequences with Integrated Primer Designer
著者:: Vivek Bhakta Mathema, 等
出版事項: (2019-04-01)

Genome-wide microsatellite characteristics of five human plasmodium species, focusing on plasmodium malariae and P. ovale curtisi
著者:: Mathema, VB, 等
出版事項: (2020)

DNA polymerase stalling at structured DNA constrains the expansion of short tandem repeats
著者:: Pierre Murat, 等
出版事項: (2020-08-01)

Utility of Plasmodium falciparum DNA from rapid diagnostic test kits for molecular analysis and whole genome amplification
著者:: Srisutham, S, 等
出版事項: (2020)

Profiling the Genome-Wide Landscape of Short Tandem Repeats by Long-Read Sequencing
著者:: Zhenhua Liu, 等
出版事項: (2022-05-01)

A reference haplotype panel for genome-wide imputation of short tandem repeats
著者:: Shubham Saini, 等
出版事項: (2018-10-01)

Genome-wide detection of short tandem repeat expansions by long-read sequencing
著者:: Qian Liu, 等
出版事項: (2020-12-01)

Polymorphic markers for identification of parasite population in Plasmodium malariae
著者:: Mathema, VB, 等
出版事項: (2020)

Native functions of short tandem repeats
著者:: Shannon E Wright, 等
出版事項: (2023-03-01)

Genome wide characterization of short tandem repeat markers in sweet orange (Citrus sinensis).
著者:: Manosh Kumar Biswas, 等
出版事項: (2014-01-01)

Limit Detection of Short Tandem Repeats (STR) Analysis on Touch DNA Samples
著者:: Vira Saamia, 等
出版事項: (2024-10-01)

Short Tandem Repeat (STR) Profiling of Earwax DNA Obtained from Healthy Volunteers
著者:: Sayed Amin Amer, 等
出版事項: (2023-07-01)

Tandemly repeated DNA families in the mouse genome
著者:: Gavrilova Ekaterina V, 等
出版事項: (2011-10-01)

Genome-wide meta-analysis of short-tandem repeats for Parkinson’s disease risk using genotype imputation
著者:: Ohlei, O, 等
出版事項: (2024)

P573: Genome-wide short tandem repeat expansion screening using optical genome mapping*
著者:: James Yu, 等
出版事項: (2024-01-01)

Correction to: Genome-wide sequencing as a first-tier screening test for short tandem repeat expansions
著者:: Indhu-Shree Rajan-Babu, 等
出版事項: (2021-09-01)

Role of Short Tandem Repeat DNA in Forensic Casework in the UK—Past, Present, and Future Perspectives
著者:: Peter Gill
出版事項: (2002-02-01)

Genetic characteristics of spouse selection based on short tandem repeats in DNA and lunula count on fingertip
著者:: Qi Xia, 等
出版事項: (2023-10-01)

Case report: Using DNA short tandem repeats to confirm nongestational origin of pulmonary choriocarcinoma
著者:: Filipa Ferreira da Silva, 等
出版事項: (2022-10-01)

An ultra-high discrimination Y chromosome short tandem repeat multiplex DNA typing system.
著者:: Erin K Hanson, 等
出版事項: (2007-01-01)

Short Tandem Repeats (STR) in cattle genomics and breeding
著者:: Teneva Atanaska, 等
出版事項: (2018-01-01)

Genome-wide microsatellite characteristics of five human Plasmodium species, focusing on Plasmodium malariae and P. ovale curtisi
著者:: Mathema Vivek Bhakta, 等
出版事項: (2020-01-01)

Rapid Generation of DNA Probes by Amplification of Tandem Repeats
著者:: George Trendelenburg, 等
出版事項: (1997-08-01)

LUSTR: a new customizable tool for calling genome-wide germline and somatic short tandem repeat variants
著者:: Jinfeng Lu, 等
出版事項: (2024-01-01)

Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads
著者:: Satomi Mitsuhashi, 等
出版事項: (2019-03-01)

Strategy Using Pooled DNA to Identify 56 Short Tandem Repeat Polymorphisms for the Bolivian Squirrel Monkey
著者:: F. Zhong, 等
出版事項: (1996-10-01)

Donor/recipient origin of lung cancer after lung transplantation by DNA short tandem repeat analysis
著者:: Julien De Wolf, 等
出版事項: (2023-09-01)

Identifying associations between short tandem repeat sequences and gene expression in yeast reveals specific repeated motifs encoding transcriptional regulatory proteins
著者:: Zongyuan Yu, 等
出版事項: (2025-01-01)

Comprehensive analysis of tandem amino acid repeats from ten angiosperm genomes
著者:: Zhou Yuan, 等
出版事項: (2011-12-01)

DNA replication, transcription, and H3K56 acetylation regulate copy number and stability at tandem repeats
著者:: Devika Salim, 等
出版事項: (2021-03-01)

Short tandem repeats delineate gene bodies across eukaryotes
著者:: William B. Reinar, 等
出版事項: (2024-12-01)

The Use of Short Tandem Repeat Analysis for Cell Line Authentication
著者:: M. D. Khorolsky, 等
出版事項: (2019-12-01)

Optimization and Validation of Candida auris Short Tandem Repeat Analysis
著者:: Theun de Groot, 等
出版事項: (2022-10-01)

General Approach to Analysis of Polymorphic Short Tandem Repeat Loci
著者:: Cynthia J. Sprecher, 等
出版事項: (1996-02-01)

Agarose-Based System for Separation of Short Tandem Repeat Loci
著者:: Hugh W. White, 等
出版事項: (1997-05-01)

Reuse of Denaturing Polyacrylamide Gels for Short Tandem Repeat Analysis
著者:: Allan Tereba, 等
出版事項: (1998-11-01)

Short tandem repeats genotyping of gestational choriocarcinoma – our experiences
著者:: Lajos Gergely, 等
出版事項: (2024-01-01)

P838: Spectrum of short tandem repeats in Taiwanese population
著者:: Ching Hsu, 等
出版事項: (2024-01-01)

Evolutionary Study of Protein Short Tandem Repeats in Protein Families
著者:: Pablo Mier, 等
出版事項: (2023-07-01)

The Genomic landscape of short tandem repeats across multiple ancestries.
著者:: Prashanth Vijayaraghavan, 等
出版事項: (2023-01-01)