Coarse-grained modelling of nucleic acids

Coarse-grained modelling of nucleic acids

<p>This thesis considers coarse-grained models of DNA and RNA, developed in particular to study nanotechnological applications as well as some important biophysical processes. We first introduce sequence-dependent thermodynamics into a previously developed coarse-grained rigid base-pair mo...

Disgrifiad llawn

Manylion Llyfryddiaeth
Prif Awdur:	Sulc, P
Awduron Eraill:	Louis, A
Fformat:	Traethawd Ymchwil
Iaith:	English
Cyhoeddwyd:	2014
Pynciau:	Condensed Matter Physics Theoretical physics Biophysics

Eitemau Tebyg

Coarse-grained modelling of DNA and DNA self-assembly
gan: Ouldridge, T
Cyhoeddwyd: (2011)

Physics of microorganism behaviour: motility, synchronisation, run-and-tumble, phototaxis.
gan: Bennett, R, et al.
Cyhoeddwyd: (2015)

Statistical mechanics of nucleic acids under mechanical stress
gan: Matek, C
Cyhoeddwyd: (2014)

Hydrodynamics of micro-swimmers in complex fluids and environments
gan: Mathijssen, A
Cyhoeddwyd: (2016)

Molecular biophysics of strong DNA bending and the RecQ DNA helicase
gan: Harrison, R
Cyhoeddwyd: (2014)

Ordering transitions and localisation properties of frustrated systems
gan: Pickles, T
Cyhoeddwyd: (2009)

Pairing, paramagnetism and prethermalization in strongly correlated low-dimensional quantum systems
gan: Robinson, N
Cyhoeddwyd: (2014)

Disorder in an exactly solvable quantum spin liquid
gan: Willans, A
Cyhoeddwyd: (2010)

Collective behaviour of model microswimmers
gan: Putz, V
Cyhoeddwyd: (2010)

Three-dimensional colloidal crystals: Crystallisation, deformation and grain boundaries
gan: Orr, NHP
Cyhoeddwyd: (2021)

Dynamics of driven colloidal systems in one-dimensional potential energy landscapes
gan: Juniper, MPN
Cyhoeddwyd: (2014)

Polar and dipolar contributions to collective cell motility
gan: Zhang, G
Cyhoeddwyd: (2022)

Active colloids and polymer translocation
gan: Cohen, J
Cyhoeddwyd: (2013)

Two-channel Kondo phases in coupled quantum dots
gan: Mitchell, A
Cyhoeddwyd: (2009)

Frustrated magnetism in the extended kagome lattice
gan: Tan, Z
Cyhoeddwyd: (2014)

The Hofstadter model and other fractional chern insulators
gan: Harper, F
Cyhoeddwyd: (2015)

Non-Gaussian fluctuations in active suspensions
gan: Zaid, I
Cyhoeddwyd: (2012)

Exploration, exploitation & complexity in biological evolution and self-assembly
gan: Johnston, IG
Cyhoeddwyd: (2010)

Molecular dynamics simulations of the equilibrium dynamics of non-ideal plasmas
gan: Mithen, J, et al.
Cyhoeddwyd: (2012)

DNA programmed assembly of active matter at the micro and nano scales
gan: Gonzalez, I
Cyhoeddwyd: (2017)

Single-molecule fluorescence studies of KirBac1.1
gan: Sadler, E, et al.
Cyhoeddwyd: (2015)

Application of magnetic torque on the bacterial flagellar motor
gan: Lim, R
Cyhoeddwyd: (2015)

Structure and function of bacterial ion channels
gan: Zubcevic, L
Cyhoeddwyd: (2012)

Real-time single-molecule observations of conformational changes in DNA polymerase
gan: Evans, GW
Cyhoeddwyd: (2013)

Theoretical studies of tunnel-coupled double quantum dots
gan: Jayatilaka, FW
Cyhoeddwyd: (2013)

DNA origami assembly
gan: Dunn, K, et al.
Cyhoeddwyd: (2014)

The behaviour and charging dynamics of concentrated electrolytes in confinement under potential control
gan: Southam, A
Cyhoeddwyd: (2022)

Liquid matter/
gan: Bratos, S., et al.
Cyhoeddwyd: (1991)

Quasiparticle interference in strongly correlated electronic systems
gan: Derry, P
Cyhoeddwyd: (2017)

Theory and simulation of DNA damage and supercoiling
gan: Selby, M
Cyhoeddwyd: (2023)

Coarse-grained modelling of a DNA origami force sensor
gan: Sen, N
Cyhoeddwyd: (2021)

Local moment phases in quantum impurity problems
gan: Tucker, A
Cyhoeddwyd: (2014)

Bottom-up coarse-grained modeling of DNA
gan: Sun, Tiedong, et al.
Cyhoeddwyd: (2021)

Quantitative description of co-assembly and evolution of small heat-shock proteins
gan: Saman, D
Cyhoeddwyd: (2021)

Interactions of carbon nanotubes and lipid bilayers
gan: Rzepala, W
Cyhoeddwyd: (2013)

Radiofrequency polarization effects in zero-field electron paramagnetic resonance
gan: Rodgers, C, et al.
Cyhoeddwyd: (2009)

Excitations in holographic quantum liquids
gan: Davison, R
Cyhoeddwyd: (2012)

Electronic structure of TiO2-based photocatalysts active under visible light
gan: Oropeza Palacio, FE
Cyhoeddwyd: (2011)

Protein-film-mediated strategies for the electrochemical immunosensing of circulating biomarkers
gan: Fleschhut, FM
Cyhoeddwyd: (2024)

Statistical mechanics of colloids and active matter in and out of equilibrium
gan: Balin, A
Cyhoeddwyd: (2017)