Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques.
MOTIVATION: Comparative genomic sequence analysis is a powerful approach for identifying putative functional elements in silico. The availability of full-genome sequences from many vertebrate species has resulted in the development of popular tools, for example, the phastCons software package that s...
Prif Awduron: | Satija, R, Hein, J, Lunter, G |
---|---|
Fformat: | Journal article |
Iaith: | English |
Cyhoeddwyd: |
2010
|
Eitemau Tebyg
-
Combining statistical alignment and phylogenetic footprinting to detect regulatory elements.
gan: Satija, R, et al.
Cyhoeddwyd: (2008) -
An efficient algorithm for statistical multiple alignment on arbitrary phylogenetic trees.
gan: Lunter, G, et al.
Cyhoeddwyd: (2003) -
BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC
gan: Satija, R, et al.
Cyhoeddwyd: (2009) -
BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC
gan: Miklós István, et al.
Cyhoeddwyd: (2009-08-01) -
Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments
gan: Iyer Venky N, et al.
Cyhoeddwyd: (2006-08-01)