Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques.

Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques.

MOTIVATION: Comparative genomic sequence analysis is a powerful approach for identifying putative functional elements in silico. The availability of full-genome sequences from many vertebrate species has resulted in the development of popular tools, for example, the phastCons software package that s...

書誌詳細
主要な著者:	Satija, R, Hein, J, Lunter, G
フォーマット:	Journal article
言語:	English
出版事項:	2010

類似資料

Combining statistical alignment and phylogenetic footprinting to detect regulatory elements.
著者:: Satija, R, 等
出版事項: (2008)

An efficient algorithm for statistical multiple alignment on arbitrary phylogenetic trees.
著者:: Lunter, G, 等
出版事項: (2003)

BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC
著者:: Satija, R, 等
出版事項: (2009)

BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC
著者:: Miklós István, 等
出版事項: (2009-08-01)

Pairwise Versus Multiple Global Network Alignment
著者:: Vipin Vijayan, 等
出版事項: (2020-01-01)

Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes.
著者:: Lunter, G
出版事項: (2007)

Investigating selection on viruses: a statistical alignment approach.
著者:: de Groot, S, 等
出版事項: (2008)

Uncertainty in homology inferences: assessing and improving genomic sequence alignment.
著者:: Lunter, G, 等
出版事項: (2008)

Genome-wide identification of human functional DNA using a neutral indel model
著者:: Lunter, G, 等
出版事項: (2006)

Investigating selection on viruses: a statistical alignment approach
著者:: Lunter Gerton, 等
出版事項: (2008-07-01)

Recursions for statistical multiple alignment.
著者:: Hein, J, 等
出版事項: (2003)

Genome-wide identification of human functional DNA using a neutral indel model.
著者:: Gerton Lunter, 等
出版事項: (2006-01-01)

Designing multiple degenerate primers via consecutive pairwise alignments
著者:: Torabi Noorossadat, 等
出版事項: (2008-01-01)

Parallelized pairwise sequence alignment using CUDA on multiple GPUs
著者:: Jung Sungbo
出版事項: (2009-06-01)

Gibbs sampler for statistical multiple alignment
著者:: Jensen, J, 等
出版事項: (2005)

A layout framework for genome-wide multiple sequence alignment graphs
著者:: Jeremias Schebera, 等
出版事項: (2024-08-01)

pmTM-align: scalable pairwise and multiple structure alignment with Apache Spark and OpenMP
著者:: Weiya Chen, 等
出版事項: (2020-09-01)

Gene ontology analysis of pairwise genetic associations in two genome-wide studies of sporadic ALS
著者:: Kim Nora, 等
出版事項: (2012-07-01)

Genome-wide tracking of dCas9-methyltransferase footprints
著者:: Christina Galonska, 等
出版事項: (2018-02-01)

Genome-wide localization of mobile elements: experimental, statistical and biological considerations
著者:: Pan Wei, 等
出版事項: (2005-06-01)

TSTA: thread and SIMD-based trapezoidal pairwise/multiple sequence-alignment method
著者:: Peiyu Zong, 等
出版事項: (2024-11-01)

Assessment on the performance of pairwise sequence alignment programs /
著者:: Muhammad Farhan Mohd. Tahir, 1994- , author
出版事項: (2017)

Following Ribosome Footprints to Understand Translation at a Genome Wide Level
著者:: Guillermo Eastman, 等
出版事項: (2018-01-01)

Addressing sagittal plane imbalance in primary total knee arthroplasty: functional alignment outperforms kinematic and mechanical alignment techniques
著者:: Victor A. van de Graaf, 等
出版事項: (2024-08-01)

Visualizing profile-profile alignment: pairwise HMM logos.
著者:: Schuster-Böckler, B, 等
出版事項: (2005)

Fuzzy ant colony algorithm for pairwise sequence alignment /
著者:: Bahman Fakhr Sabahi, 1983-, 等
出版事項: (2012)

gpALIGNER: A Fast Algorithm for Global Pairwise Alignment of DNA Sequences
著者:: Mostafa Hadian Dehkordi, 等
出版事項: (2011-06-01)

Manhattan++: displaying genome-wide association summary statistics with multiple annotation layers
著者:: Grace, C, 等
出版事項: (2019)

Manhattan++: displaying genome-wide association summary statistics with multiple annotation layers
著者:: Christopher Grace, 等
出版事項: (2019-11-01)

Improving pan-genome annotation using whole genome multiple alignment
著者:: Salzberg Steven L, 等
出版事項: (2011-06-01)

Human transposable elements in Repbase: genomic footprints from fish to humans
著者:: Kenji K. Kojima
出版事項: (2018-01-01)

Genome-Wide Association Study of Seed Dormancy and the Genomic Consequences of Improvement Footprints in Rice (Oryza sativa L.)
著者:: Qing Lu, 等
出版事項: (2018-01-01)

Genome-wide comparative analysis of transposable elements in Palmae genomes
著者:: Mohanad A. Ibrahim, 等
出版事項: (2021-11-01)

Statistical physics of pairwise probability models
著者:: Yasser Roudi, 等
出版事項: (2009-11-01)

Universal internucleotide statistics in full genomes: a footprint of the DNA structure and packaging?
著者:: Mikhail I Bogachev, 等
出版事項: (2014-01-01)

The Use of Multiplicity Corrections, Order Statistics and Generalized Family-Wise Statistics with Application to Genome-Wide Studies.
著者:: Steven J Schrodi
出版事項: (2016-01-01)

Improved statistics for genome-wide interaction analysis.
著者:: Masao Ueki, 等
出版事項: (2012-01-01)

Flight quotas outperform focused mitigation strategies in reducing the carbon footprint of academic travel
著者:: Tamara Ben-Ari, 等
出版事項: (2024-01-01)

Detecting multiple associations in genome-wide studies
著者:: Dudbridge Frank, 等
出版事項: (2006-03-01)

Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments
著者:: Bass Ellen J, 等
出版事項: (2010-03-01)