Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques.

Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques.

MOTIVATION: Comparative genomic sequence analysis is a powerful approach for identifying putative functional elements in silico. The availability of full-genome sequences from many vertebrate species has resulted in the development of popular tools, for example, the phastCons software package that s...

Полное описание

Библиографические подробности
Главные авторы:	Satija, R, Hein, J, Lunter, G
Формат:	Journal article
Язык:	English
Опубликовано:	2010

Схожие документы

Combining statistical alignment and phylogenetic footprinting to detect regulatory elements.
по: Satija, R, и др.
Опубликовано: (2008)

An efficient algorithm for statistical multiple alignment on arbitrary phylogenetic trees.
по: Lunter, G, и др.
Опубликовано: (2003)

BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC
по: Satija, R, и др.
Опубликовано: (2009)

BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC
по: Miklós István, и др.
Опубликовано: (2009-08-01)

Pairwise Versus Multiple Global Network Alignment
по: Vipin Vijayan, и др.
Опубликовано: (2020-01-01)

Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes.
по: Lunter, G
Опубликовано: (2007)

Investigating selection on viruses: a statistical alignment approach.
по: de Groot, S, и др.
Опубликовано: (2008)

Uncertainty in homology inferences: assessing and improving genomic sequence alignment.
по: Lunter, G, и др.
Опубликовано: (2008)

Genome-wide identification of human functional DNA using a neutral indel model
по: Lunter, G, и др.
Опубликовано: (2006)

Investigating selection on viruses: a statistical alignment approach
по: Lunter Gerton, и др.
Опубликовано: (2008-07-01)

Recursions for statistical multiple alignment.
по: Hein, J, и др.
Опубликовано: (2003)

Genome-wide identification of human functional DNA using a neutral indel model.
по: Gerton Lunter, и др.
Опубликовано: (2006-01-01)

Designing multiple degenerate primers via consecutive pairwise alignments
по: Torabi Noorossadat, и др.
Опубликовано: (2008-01-01)

Parallelized pairwise sequence alignment using CUDA on multiple GPUs
по: Jung Sungbo
Опубликовано: (2009-06-01)

Gibbs sampler for statistical multiple alignment
по: Jensen, J, и др.
Опубликовано: (2005)

A layout framework for genome-wide multiple sequence alignment graphs
по: Jeremias Schebera, и др.
Опубликовано: (2024-08-01)

pmTM-align: scalable pairwise and multiple structure alignment with Apache Spark and OpenMP
по: Weiya Chen, и др.
Опубликовано: (2020-09-01)

Genome-wide tracking of dCas9-methyltransferase footprints
по: Christina Galonska, и др.
Опубликовано: (2018-02-01)

Gene ontology analysis of pairwise genetic associations in two genome-wide studies of sporadic ALS
по: Kim Nora, и др.
Опубликовано: (2012-07-01)

Genome-wide localization of mobile elements: experimental, statistical and biological considerations
по: Pan Wei, и др.
Опубликовано: (2005-06-01)

TSTA: thread and SIMD-based trapezoidal pairwise/multiple sequence-alignment method
по: Peiyu Zong, и др.
Опубликовано: (2024-11-01)

Assessment on the performance of pairwise sequence alignment programs /
по: Muhammad Farhan Mohd. Tahir, 1994- , author
Опубликовано: (2017)

Following Ribosome Footprints to Understand Translation at a Genome Wide Level
по: Guillermo Eastman, и др.
Опубликовано: (2018-01-01)

Addressing sagittal plane imbalance in primary total knee arthroplasty: functional alignment outperforms kinematic and mechanical alignment techniques
по: Victor A. van de Graaf, и др.
Опубликовано: (2024-08-01)

Visualizing profile-profile alignment: pairwise HMM logos.
по: Schuster-Böckler, B, и др.
Опубликовано: (2005)

Fuzzy ant colony algorithm for pairwise sequence alignment /
по: Bahman Fakhr Sabahi, 1983-, и др.
Опубликовано: (2012)

gpALIGNER: A Fast Algorithm for Global Pairwise Alignment of DNA Sequences
по: Mostafa Hadian Dehkordi, и др.
Опубликовано: (2011-06-01)

Manhattan++: displaying genome-wide association summary statistics with multiple annotation layers
по: Grace, C, и др.
Опубликовано: (2019)

Manhattan++: displaying genome-wide association summary statistics with multiple annotation layers
по: Christopher Grace, и др.
Опубликовано: (2019-11-01)

Improving pan-genome annotation using whole genome multiple alignment
по: Salzberg Steven L, и др.
Опубликовано: (2011-06-01)

Human transposable elements in Repbase: genomic footprints from fish to humans
по: Kenji K. Kojima
Опубликовано: (2018-01-01)

Genome-Wide Association Study of Seed Dormancy and the Genomic Consequences of Improvement Footprints in Rice (Oryza sativa L.)
по: Qing Lu, и др.
Опубликовано: (2018-01-01)

Genome-wide comparative analysis of transposable elements in Palmae genomes
по: Mohanad A. Ibrahim, и др.
Опубликовано: (2021-11-01)

Statistical physics of pairwise probability models
по: Yasser Roudi, и др.
Опубликовано: (2009-11-01)

Universal internucleotide statistics in full genomes: a footprint of the DNA structure and packaging?
по: Mikhail I Bogachev, и др.
Опубликовано: (2014-01-01)

The Use of Multiplicity Corrections, Order Statistics and Generalized Family-Wise Statistics with Application to Genome-Wide Studies.
по: Steven J Schrodi
Опубликовано: (2016-01-01)

Improved statistics for genome-wide interaction analysis.
по: Masao Ueki, и др.
Опубликовано: (2012-01-01)

Flight quotas outperform focused mitigation strategies in reducing the carbon footprint of academic travel
по: Tamara Ben-Ari, и др.
Опубликовано: (2024-01-01)

Detecting multiple associations in genome-wide studies
по: Dudbridge Frank, и др.
Опубликовано: (2006-03-01)

Phylogenetic automata, pruning, and multiple alignment
по: Westesson, O, и др.
Опубликовано: (2011)