Quantifying the similarities within fold space.

Quantifying the similarities within fold space.

We have used GRATH, a graph-based structure comparison algorithm, to map the similarities between the different folds observed in the CATH domain structure database. Statistical analysis of the distributions of the fold similarities has allowed us to assess the significance for any similarity. There...

書目詳細資料
Main Authors:	Harrison, A, Pearl, F, Mott, R, Thornton, J, Orengo, C
格式:	Journal article
語言:	English
出版:	2002

相似書籍

Recognizing the fold of a protein structure.
由: Harrison, A, et al.
出版: (2003)

CATHEDRAL: a fast and effective algorithm to predict folds and domain boundaries from multidomain protein structures.
由: Oliver C Redfern, et al.
出版: (2007-11-01)

Sialidase-like Asp-boxes: sequence-similar structures within different protein folds.
由: Copley, R, et al.
出版: (2001)

Comparative molecular dynamics--similar folds and similar motions?
由: Pang, A, et al.
出版: (2005)

Statistical modeling to quantify the uncertainty of FoldX-predicted protein folding and binding stability
由: Yesol Sapozhnikov, et al.
出版: (2023-11-01)

On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world?
由: Lupas, A, et al.
出版: (2001)

Towards quantifying plasmid similarity
由: Matlock, W, et al.
出版: (2024)

Exploring Protein Fold Space
由: William R. Taylor
出版: (2020-01-01)

Similar Structures to the E-to-H Helix Unit in the Globin-Like Fold are Found in Other Helical Folds
由: Masanari Matsuoka, et al.
出版: (2014-02-01)

The moduli spaces of S-fold CFTs
由: Ivan Garozzo, et al.
出版: (2019-01-01)

The folded space of machine listening
由: Domenico Napolitano, et al.
出版: (2021-01-01)

Quantifying similarity of pore-geometry in nanoporous materials
由: Yongjin Lee, et al.
出版: (2017-05-01)

Heme proteins--diversity in structural characteristics, function, and folding.
由: Smith, L, et al.
出版: (2010)

Erythematous, telangiectatic nodule within the melomental fold
由: Richard Bindernagel, DO, MBA, et al.
出版: (2022-06-01)

Design and Manufacture of Similar Model of Folding Wings and Study on Dynamic Characteristics
由: Xinqiang Lu, et al.
出版: (2022-12-01)

Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways.
由: Sean L Seyler, et al.
出版: (2015-10-01)

AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms
由: Nicola Bordin, et al.
出版: (2023-02-01)

Quantifying Raw RF Dataset Similarity for Transfer Learning Applications
由: Lauren J. Wong, et al.
出版: (2022-01-01)

Structural Bridges through Fold Space.
由: Hannah Edwards, et al.
出版: (2015-09-01)

Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity.
由: Münz, M, et al.
出版: (2010)

Statistical Measures to Quantify Similarity between Molecular Dynamics Simulation Trajectories
由: Jenny Farmer, et al.
出版: (2017-11-01)

Deep Learnability: Using Neural Networks to Quantify Language Similarity and Learnability
由: Clara Cohen, et al.
出版: (2020-06-01)

Gene functioning and storage within a folded genome
由: Sergey V. Razin, et al.
出版: (2017-08-01)

Co-transcriptional folding is encoded within RNA genes
出版: (2004)

Correction: Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways.
由: Sean L Seyler, et al.
出版: (2019-06-01)

dissectHMMER: a HMMER-based score dissection framework that statistically evaluates fold-critical sequence segments for domain fold similarity
由: Wong, Wing-Cheong, et al.
出版: (2015)

Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity
由: Lyngsø Rune, et al.
出版: (2010-04-01)

Quantifying layer similarity in multiplex networks: a systematic study
由: Piotr Bródka, et al.
出版: (2018-01-01)

Using text analysis to quantify the similarity and evolution of scientific disciplines
由: Laércio Dias, et al.
出版: (2018-01-01)

Quantifying Musical Meter: How Similar are African and Western Rhythm?
由: Toussaint, Godfried T.
出版: (2015-11-01)

Dynameomics: protein dynamics and unfolding across fold space
由: Jonsson Amanda L., et al.
出版: (2010-12-01)

Quantifying selective reporting and the Proteus phenomenon for multiple datasets with similar bias.
由: Thomas Pfeiffer, et al.
出版: (2011-03-01)

Sampling of structure and sequence space of small protein folds
由: Thomas W. Linsky, et al.
出版: (2022-11-01)

Image-Text Connection: Exploring the Expansion of the Diversity Within Joint Feature Space Similarity Scores
由: Mahsa Mohammadi, et al.
出版: (2023-01-01)

Maximum-likelihood estimation of the statistical distribution of Smith-Waterman local sequence similarity scores.
由: Mott, R
出版: (1992)

Assessing the Ability of Spectroscopic Methods to Determine the Difference in the Folding Propensities of Highly Similar β‑Hairpins
由: Hanna Andersson, et al.
出版: (2017-02-01)

The similarity of inherited diseases (I): clinical similarity within the phenotypic series
由: Alessio Gamba, et al.
出版: (2021-02-01)

Quantifying significance of topographical similarities of disease-related brain metabolic patterns.
由: Ji Hyun Ko, et al.
出版: (2014-01-01)

Similar or Different Effects? Quantifying the Effects of Humility and Modesty on Job Performance
由: He Peng
出版: (2022-05-01)

Probing protein fold space with a simplified model.
由: Minary, P, et al.
出版: (2008)