Coarse-grained modeling of DNA and DNA nanotechnology

Coarse-grained modeling of DNA and DNA nanotechnology

Dades bibliogràfiques
Autors principals:	Ouldridge, T, Sulc, P, Romano, F, Louis, A, Doye, J
Format:	Conference item
Publicat:	2012

Ítems similars

Coarse-graining DNA for simulations of DNA nanotechnology.
per: Doye, J, et al.
Publicat: (2013)

Simulating a burnt-bridges DNA motor with a coarse-grained DNA model
per: Sulc, P, et al.
Publicat: (2012)

Simulating a burnt-bridges DNA motor with a coarse-grained DNA model
per: Šulc, P, et al.
Publicat: (2014)

Sequence-dependent thermodynamics of a coarse-grained DNA model.
per: Šulc, P, et al.
Publicat: (2012)

Optimizing DNA nanotechnology through coarse-grained modeling: a two-footed DNA walker.
per: Ouldridge, T, et al.
Publicat: (2013)

DNA nanotweezers studied with a coarse-grained model of DNA.
per: Ouldridge, T, et al.
Publicat: (2010)

DNA nanotweezers studied with a coarse-grained model of DNA
per: Ouldridge, T, et al.
Publicat: (2010)

Coarse-grained simulations of DNA overstretching.
per: Romano, F, et al.
Publicat: (2013)

A nucleotide-level coarse-grained model of RNA
per: Šulc, P, et al.
Publicat: (2014)

Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model.
per: Ouldridge, T, et al.
Publicat: (2011)

Coarse-grained modelling of DNA-RNA hybrids
per: Ratajczyk, EJ, et al.
Publicat: (2023)

Identifying physical causes of apparent enhanced cyclization of short DNA molecules with a coarse-grained model
per: Harrison, R, et al.
Publicat: (2019)

Introducing improved structural properties and salt dependence into a coarse-grained model of DNA.
per: Snodin, B, et al.
Publicat: (2015)

Multi-scale coarse-graining for the study of assembly pathways in DNA-brick self-assembly
per: Fonseca, P, et al.
Publicat: (2018)

Coarse-grained modelling of DNA and DNA self-assembly
per: Ouldridge, T
Publicat: (2011)

Coarse-grained modelling of the structural properties of DNA origami
per: Snodin, B, et al.
Publicat: (2019)

Free energy landscapes of DNA and its assemblies: perspectives from coarse-grained modelling
per: Doye, JPK, et al.
Publicat: (2022)

Coarse-Grained Modelling of Extreme DNA Bending
per: Harrison, R, et al.
Publicat: (2014)

DNA hybridization kinetics: zippering, internal displacement and sequence dependence.
per: Ouldridge, T, et al.
Publicat: (2013)

Characterizing the motion of jointed DNA nanostructures using a coarse-grained model
per: Sharma, R, et al.
Publicat: (2017)

Coarse-grained modelling of supercoiled RNA
per: Matek, C, et al.
Publicat: (2015)

Characterizing DNA Star-Tile-Based Nanostructures Using a Coarse-Grained Model.
per: Schreck, J, et al.
Publicat: (2016)

DNA hairpins primarily promote duplex melting rather than inhibiting hybridization
per: Schreck, J, et al.
Publicat: (2014)

Characterizing the bending and flexibility induced by bulges in DNA duplexes.
per: Schreck, J, et al.
Publicat: (2015)

The role of loop stacking in the dynamics of DNA hairpin formation.
per: Mosayebi, M, et al.
Publicat: (2014)

The effect of topology on the structure and free energy landscape of DNA kissing complexes.
per: Romano, F, et al.
Publicat: (2012)

Plectoneme tip bubbles : coupled denaturation and writhing in supercoiled DNA
per: Matek, C, et al.
Publicat: (2015)

Coarse-grained modelling of nucleic acids
per: Sulc, P
Publicat: (2014)

On the biophysics and kinetics of toehold-mediated DNA strand displacement
per: Srinivas, N, et al.
Publicat: (2013)

The self-assembly of DNA Holliday junctions studied with a minimal model
per: Ouldridge, T, et al.
Publicat: (2009)

Bottom-up coarse-grained modeling of DNA
per: Sun, Tiedong, et al.
Publicat: (2021)

Modelling toehold-mediated RNA strand displacement
per: Šulc, P, et al.
Publicat: (2015)

Direct simulation of the self-assembly of a small DNA origami
per: Snodin, BEK, et al.
Publicat: (2016)

A Primer on the oxDNA Model of DNA: When to Use it, How to Simulate it and How to Interpret the Results
per: A. Sengar, et al.
Publicat: (2021-06-01)

Simulating large DNA nanostructures with a coarse-grained model
per: Snodin, B
Publicat: (2016)

Coarse-grained modelling of a DNA origami force sensor
per: Sen, N
Publicat: (2021)

MARTINI-Based Protein-DNA Coarse-Grained HADDOCKing
per: Rodrigo V. Honorato, et al.
Publicat: (2019-10-01)

DNA cruciform arms nucleate through a correlated but asynchronous cooperative mechanism.
per: Matek, C, et al.
Publicat: (2012)

Force-induced rupture of a DNA duplex: from fundamentals to force sensors
per: Mosayebi, M, et al.
Publicat: (2015)

Influence of ionic conditions on knotting in a coarse-grained model for DNA
per: Sarah Wettermann, et al.
Publicat: (2023-01-01)