Coarse-grained modeling of DNA and DNA nanotechnology

Coarse-grained modeling of DNA and DNA nanotechnology

Bibliografiske detaljer
Main Authors:	Ouldridge, T, Sulc, P, Romano, F, Louis, A, Doye, J
Format:	Conference item
Udgivet:	2012

Lignende værker

Coarse-graining DNA for simulations of DNA nanotechnology.
af: Doye, J, et al.
Udgivet: (2013)

Simulating a burnt-bridges DNA motor with a coarse-grained DNA model
af: Sulc, P, et al.
Udgivet: (2012)

Simulating a burnt-bridges DNA motor with a coarse-grained DNA model
af: Šulc, P, et al.
Udgivet: (2014)

Sequence-dependent thermodynamics of a coarse-grained DNA model.
af: Šulc, P, et al.
Udgivet: (2012)

Optimizing DNA nanotechnology through coarse-grained modeling: a two-footed DNA walker.
af: Ouldridge, T, et al.
Udgivet: (2013)

DNA nanotweezers studied with a coarse-grained model of DNA.
af: Ouldridge, T, et al.
Udgivet: (2010)

DNA nanotweezers studied with a coarse-grained model of DNA
af: Ouldridge, T, et al.
Udgivet: (2010)

Coarse-grained simulations of DNA overstretching.
af: Romano, F, et al.
Udgivet: (2013)

A nucleotide-level coarse-grained model of RNA
af: Šulc, P, et al.
Udgivet: (2014)

Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model.
af: Ouldridge, T, et al.
Udgivet: (2011)

Coarse-grained modelling of DNA-RNA hybrids
af: Ratajczyk, EJ, et al.
Udgivet: (2023)

Identifying physical causes of apparent enhanced cyclization of short DNA molecules with a coarse-grained model
af: Harrison, R, et al.
Udgivet: (2019)

Introducing improved structural properties and salt dependence into a coarse-grained model of DNA.
af: Snodin, B, et al.
Udgivet: (2015)

Multi-scale coarse-graining for the study of assembly pathways in DNA-brick self-assembly
af: Fonseca, P, et al.
Udgivet: (2018)

Coarse-grained modelling of DNA and DNA self-assembly
af: Ouldridge, T
Udgivet: (2011)

Coarse-grained modelling of the structural properties of DNA origami
af: Snodin, B, et al.
Udgivet: (2019)

Free energy landscapes of DNA and its assemblies: perspectives from coarse-grained modelling
af: Doye, JPK, et al.
Udgivet: (2022)

Coarse-Grained Modelling of Extreme DNA Bending
af: Harrison, R, et al.
Udgivet: (2014)

DNA hybridization kinetics: zippering, internal displacement and sequence dependence.
af: Ouldridge, T, et al.
Udgivet: (2013)

Characterizing the motion of jointed DNA nanostructures using a coarse-grained model
af: Sharma, R, et al.
Udgivet: (2017)

Coarse-grained modelling of supercoiled RNA
af: Matek, C, et al.
Udgivet: (2015)

Characterizing DNA Star-Tile-Based Nanostructures Using a Coarse-Grained Model.
af: Schreck, J, et al.
Udgivet: (2016)

DNA hairpins primarily promote duplex melting rather than inhibiting hybridization
af: Schreck, J, et al.
Udgivet: (2014)

Characterizing the bending and flexibility induced by bulges in DNA duplexes.
af: Schreck, J, et al.
Udgivet: (2015)

The role of loop stacking in the dynamics of DNA hairpin formation.
af: Mosayebi, M, et al.
Udgivet: (2014)

The effect of topology on the structure and free energy landscape of DNA kissing complexes.
af: Romano, F, et al.
Udgivet: (2012)

Plectoneme tip bubbles : coupled denaturation and writhing in supercoiled DNA
af: Matek, C, et al.
Udgivet: (2015)

Coarse-grained modelling of nucleic acids
af: Sulc, P
Udgivet: (2014)

On the biophysics and kinetics of toehold-mediated DNA strand displacement
af: Srinivas, N, et al.
Udgivet: (2013)

The self-assembly of DNA Holliday junctions studied with a minimal model
af: Ouldridge, T, et al.
Udgivet: (2009)

Bottom-up coarse-grained modeling of DNA
af: Sun, Tiedong, et al.
Udgivet: (2021)

Modelling toehold-mediated RNA strand displacement
af: Šulc, P, et al.
Udgivet: (2015)

Direct simulation of the self-assembly of a small DNA origami
af: Snodin, BEK, et al.
Udgivet: (2016)

A Primer on the oxDNA Model of DNA: When to Use it, How to Simulate it and How to Interpret the Results
af: A. Sengar, et al.
Udgivet: (2021-06-01)

Simulating large DNA nanostructures with a coarse-grained model
af: Snodin, B
Udgivet: (2016)

Coarse-grained modelling of a DNA origami force sensor
af: Sen, N
Udgivet: (2021)

MARTINI-Based Protein-DNA Coarse-Grained HADDOCKing
af: Rodrigo V. Honorato, et al.
Udgivet: (2019-10-01)

DNA cruciform arms nucleate through a correlated but asynchronous cooperative mechanism.
af: Matek, C, et al.
Udgivet: (2012)

Force-induced rupture of a DNA duplex: from fundamentals to force sensors
af: Mosayebi, M, et al.
Udgivet: (2015)

Influence of ionic conditions on knotting in a coarse-grained model for DNA
af: Sarah Wettermann, et al.
Udgivet: (2023-01-01)