Coarse-grained modeling of DNA and DNA nanotechnology

Coarse-grained modeling of DNA and DNA nanotechnology

Номзүйн дэлгэрэнгүй
Үндсэн зохиолчид:	Ouldridge, T, Sulc, P, Romano, F, Louis, A, Doye, J
Формат:	Conference item
Хэвлэсэн:	2012

Ижил төстэй зүйлс

Coarse-graining DNA for simulations of DNA nanotechnology.
-н: Doye, J, зэрэг
Хэвлэсэн: (2013)

Simulating a burnt-bridges DNA motor with a coarse-grained DNA model
-н: Sulc, P, зэрэг
Хэвлэсэн: (2012)

Simulating a burnt-bridges DNA motor with a coarse-grained DNA model
-н: Šulc, P, зэрэг
Хэвлэсэн: (2014)

Sequence-dependent thermodynamics of a coarse-grained DNA model.
-н: Šulc, P, зэрэг
Хэвлэсэн: (2012)

Optimizing DNA nanotechnology through coarse-grained modeling: a two-footed DNA walker.
-н: Ouldridge, T, зэрэг
Хэвлэсэн: (2013)

DNA nanotweezers studied with a coarse-grained model of DNA.
-н: Ouldridge, T, зэрэг
Хэвлэсэн: (2010)

DNA nanotweezers studied with a coarse-grained model of DNA
-н: Ouldridge, T, зэрэг
Хэвлэсэн: (2010)

Coarse-grained simulations of DNA overstretching.
-н: Romano, F, зэрэг
Хэвлэсэн: (2013)

A nucleotide-level coarse-grained model of RNA
-н: Šulc, P, зэрэг
Хэвлэсэн: (2014)

Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model.
-н: Ouldridge, T, зэрэг
Хэвлэсэн: (2011)

Coarse-grained modelling of DNA-RNA hybrids
-н: Ratajczyk, EJ, зэрэг
Хэвлэсэн: (2023)

Identifying physical causes of apparent enhanced cyclization of short DNA molecules with a coarse-grained model
-н: Harrison, R, зэрэг
Хэвлэсэн: (2019)

Introducing improved structural properties and salt dependence into a coarse-grained model of DNA.
-н: Snodin, B, зэрэг
Хэвлэсэн: (2015)

Multi-scale coarse-graining for the study of assembly pathways in DNA-brick self-assembly
-н: Fonseca, P, зэрэг
Хэвлэсэн: (2018)

Coarse-grained modelling of DNA and DNA self-assembly
-н: Ouldridge, T
Хэвлэсэн: (2011)

Coarse-grained modelling of the structural properties of DNA origami
-н: Snodin, B, зэрэг
Хэвлэсэн: (2019)

Free energy landscapes of DNA and its assemblies: perspectives from coarse-grained modelling
-н: Doye, JPK, зэрэг
Хэвлэсэн: (2022)

Coarse-Grained Modelling of Extreme DNA Bending
-н: Harrison, R, зэрэг
Хэвлэсэн: (2014)

DNA hybridization kinetics: zippering, internal displacement and sequence dependence.
-н: Ouldridge, T, зэрэг
Хэвлэсэн: (2013)

Characterizing the motion of jointed DNA nanostructures using a coarse-grained model
-н: Sharma, R, зэрэг
Хэвлэсэн: (2017)

Coarse-grained modelling of supercoiled RNA
-н: Matek, C, зэрэг
Хэвлэсэн: (2015)

Characterizing DNA Star-Tile-Based Nanostructures Using a Coarse-Grained Model.
-н: Schreck, J, зэрэг
Хэвлэсэн: (2016)

DNA hairpins primarily promote duplex melting rather than inhibiting hybridization
-н: Schreck, J, зэрэг
Хэвлэсэн: (2014)

Characterizing the bending and flexibility induced by bulges in DNA duplexes.
-н: Schreck, J, зэрэг
Хэвлэсэн: (2015)

The role of loop stacking in the dynamics of DNA hairpin formation.
-н: Mosayebi, M, зэрэг
Хэвлэсэн: (2014)

The effect of topology on the structure and free energy landscape of DNA kissing complexes.
-н: Romano, F, зэрэг
Хэвлэсэн: (2012)

Plectoneme tip bubbles : coupled denaturation and writhing in supercoiled DNA
-н: Matek, C, зэрэг
Хэвлэсэн: (2015)

Coarse-grained modelling of nucleic acids
-н: Sulc, P
Хэвлэсэн: (2014)

On the biophysics and kinetics of toehold-mediated DNA strand displacement
-н: Srinivas, N, зэрэг
Хэвлэсэн: (2013)

The self-assembly of DNA Holliday junctions studied with a minimal model
-н: Ouldridge, T, зэрэг
Хэвлэсэн: (2009)

Bottom-up coarse-grained modeling of DNA
-н: Sun, Tiedong, зэрэг
Хэвлэсэн: (2021)

Modelling toehold-mediated RNA strand displacement
-н: Šulc, P, зэрэг
Хэвлэсэн: (2015)

Direct simulation of the self-assembly of a small DNA origami
-н: Snodin, BEK, зэрэг
Хэвлэсэн: (2016)

A Primer on the oxDNA Model of DNA: When to Use it, How to Simulate it and How to Interpret the Results
-н: A. Sengar, зэрэг
Хэвлэсэн: (2021-06-01)

Simulating large DNA nanostructures with a coarse-grained model
-н: Snodin, B
Хэвлэсэн: (2016)

Coarse-grained modelling of a DNA origami force sensor
-н: Sen, N
Хэвлэсэн: (2021)

MARTINI-Based Protein-DNA Coarse-Grained HADDOCKing
-н: Rodrigo V. Honorato, зэрэг
Хэвлэсэн: (2019-10-01)

DNA cruciform arms nucleate through a correlated but asynchronous cooperative mechanism.
-н: Matek, C, зэрэг
Хэвлэсэн: (2012)

Force-induced rupture of a DNA duplex: from fundamentals to force sensors
-н: Mosayebi, M, зэрэг
Хэвлэсэн: (2015)

Influence of ionic conditions on knotting in a coarse-grained model for DNA
-н: Sarah Wettermann, зэрэг
Хэвлэсэн: (2023-01-01)