ReadItAndKeep: rapid decontamination of SARS-CoV-2 sequencing reads

Viral sequence data from clinical samples frequently contain contaminating human reads, which must be removed prior to sharing for legal and ethical reasons. To enable host read removal for SARS-CoV-2 sequencing data on low-specification laptops, we developed ReadItAndKeep, a fast lightweight tool f...

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Detalles Bibliográficos
Main Authors: Hunt, M, Swann, J, Constantinides, B, Fowler, PW, Iqbal, Z
Formato: Journal article
Idioma:English
Publicado: Oxford University Press 2022