RNA2HLA: HLA-based quality control of RNA-seq datasets

RNA2HLA: HLA-based quality control of RNA-seq datasets

RNA-sequencing (RNA-seq) is a widely used approach for accessing the transcriptome in biomedical research. Studies frequently include multiple samples taken from the same individual at various time points or under different conditions, correct assignment of those samples to each particular participa...

Ausführliche Beschreibung

Bibliographische Detailangaben
Hauptverfasser:	Chelysheva, I, Pollard, AJ, O’Connor, D
Format:	Journal article
Sprache:	English
Veröffentlicht:	Oxford University Press 2021

Ähnliche Einträge

Correction: HLA Haplotyping from RNA-seq Data Using Hierarchical Read Weighting.
Veröffentlicht: (2014-01-01)

Correction: HLA Haplotyping from RNA-seq Data Using Hierarchical Read Weighting
Veröffentlicht: (2014-01-01)

MiRNA-mediated control of HLA-G expression and function.
von: Irit Manaster, et al.
Veröffentlicht: (2012-01-01)

HLA diversity in the 1000 genomes dataset.
von: Pierre-Antoine Gourraud, et al.
Veröffentlicht: (2014-01-01)

Expressions of HLA Class II Genes in Cutaneous Melanoma Were Associated with Clinical Outcome: Bioinformatics Approaches and Systematic Analysis of Public Microarray and RNA-Seq Datasets
von: Yang-Yi Chen, et al.
Veröffentlicht: (2019-06-01)

Tetrameric complexes of HLA-E, HLA-F, and HLA-G.
von: Allan, D, et al.
Veröffentlicht: (2002)

HLAProfiler utilizes k-mer profiles to improve HLA calling accuracy for rare and common alleles in RNA-seq data
von: Martin L. Buchkovich, et al.
Veröffentlicht: (2017-09-01)

Diversity in the HLA-I Recognition of HLA-F Monoclonal Antibodies: HLA-F or HLA-Ib Monospecific, HLA-E or HLA-G Bispecific Antibodies with or without HLA-Ia Reactivity
von: Mepur H. Ravindranath, et al.
Veröffentlicht: (2024-01-01)

RNA splicing analysis using heterogeneous and large RNA-seq datasets
von: Jorge Vaquero-Garcia, et al.
Veröffentlicht: (2023-03-01)

O sistema HLA <br>The HLA
von: Aldo Waldrigues
Veröffentlicht: (1981-11-01)

Discovery of protein-lncRNA interactions by integrating large-scale CLIP-Seq and RNA-Seq datasets
von: Jun-Hao eLi, et al.
Veröffentlicht: (2015-01-01)

MicroRNA Variants and HLA-miRNA Interactions are Novel Rheumatoid Arthritis Susceptibility Factors
von: Shicheng Guo, et al.
Veröffentlicht: (2021-10-01)

HLA*LA—HLA typing from linearly projected graph alignments
von: Dilthey, AT, et al.
Veröffentlicht: (2019)

High resolution allele frequency analysis of HLA-A, HLA-B, HLA-DRB1, HLA-C, HLA-DQB1 and HLA-DPB1 in Guangdong Cord Blood Bank
von: RUI Derong, et al.
Veröffentlicht: (2024-11-01)

Processing single-cell RNA-seq datasets using SingCellaR
von: Wang, G, et al.
Veröffentlicht: (2022)

An Expanded Role for HLA Genes: HLA-B Encodes a microRNA that Regulates IgA and Other Immune Response Transcripts
von: Nilesh Chitnis, et al.
Veröffentlicht: (2017-05-01)

Chapter 1 HLA-Mediated Control of HIV and HIV Adaptation to HLA
von: Payne, R, et al.
Veröffentlicht: (2009)

Structure and function of the human MHC class Ib molecules HLA-E, HLA-F and HLA-G.
von: O'Callaghan, C, et al.
Veröffentlicht: (1998)

Spotlight on systems vaccinology: a novel approach to elucidate correlates of protection
von: Zhu, H, et al.
Veröffentlicht: (2023)

GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure
von: John A. Hadish, et al.
Veröffentlicht: (2022-05-01)

Targeted RNA-Based Oxford Nanopore Sequencing for Typing 12 Classical HLA Genes
von: Tiira Johansson, et al.
Veröffentlicht: (2021-03-01)

HLA and non-HLA polymorphisms in renal transplantation
von: Stéphanie Laperrousaz, et al.
Veröffentlicht: (2012-08-01)

Identification of a novel HLA-A2 subtype, HLA-A*0216.
von: Barouch, D, et al.
Veröffentlicht: (1995)

High-sensitivity HLA typing by Saturated Tiling Capture Sequencing (STC-Seq)
von: Yang Jiao, et al.
Veröffentlicht: (2018-01-01)

HLA-H: Transcriptional Activity and HLA-E Mobilization
von: François Jordier, et al.
Veröffentlicht: (2020-01-01)

Tuning of NK-Specific HLA-C Expression by Alternative mRNA Splicing
von: Frederick J. Goodson-Gregg, et al.
Veröffentlicht: (2020-01-01)

Statistical HLA type imputation from large and heterogeneous datasets
von: Dilthey, A
Veröffentlicht: (2012)

DIFFERENTIAL IMPACT OF HLA-A, HLA-B AND HLA-DR COMPATIBILITY ON THE RENAL ALLOGRAFT SURVIVAL
von: V. Y. Abramov, et al.
Veröffentlicht: (2012-09-01)

Antigens HLA-G, sHLA- G and sHLA- class I in reproductive failure.
von: Tomasz Plonka, et al.
Veröffentlicht: (2008-04-01)

The Molecular Origin and Consequences of Escape from miRNA Regulation by HLA-C Alleles
von: O'hUigin, Colm, et al.
Veröffentlicht: (2011)

Integrated analysis of single‐cell RNA‐seq dataset and bulk RNA‐seq dataset constructs a prognostic model for predicting survival in human glioblastoma
von: Wenwen Lai, et al.
Veröffentlicht: (2022-05-01)

Symposium 6: HLA and Non-HLA genetic predisposition
von: Gloria Cerrone
Veröffentlicht: (2020-11-01)

Elevated neoantigen levels in tumors with somatic mutations in the HLA-A, HLA-B, HLA-C and B2M genes
von: Andrea Castro, et al.
Veröffentlicht: (2019-07-01)

Identification of presented SARS-CoV-2 HLA class I and HLA class II peptides using HLA peptidomics
von: Adi Nagler, et al.
Veröffentlicht: (2021-06-01)

IDENTIFICATION OF A NOVEL HLA-A2 SUBTYPE, HLA-A-ASTERISK-0216
von: Barouch, D, et al.
Veröffentlicht: (1995)

HLA RNA Sequencing With Unique Molecular Identifiers Reveals High Allele-Specific Variability in mRNA Expression
von: Tiira Johansson, et al.
Veröffentlicht: (2021-02-01)

Choice of pre-processing pipeline influences clustering quality of scRNA-seq datasets
von: Inbal Shainer, et al.
Veröffentlicht: (2021-09-01)

RNA-QC-chain: comprehensive and fast quality control for RNA-Seq data
von: Qian Zhou, et al.
Veröffentlicht: (2018-02-01)

Revisiting the Influence of HLA-type, Frequency, HLA-supertype and Homozygosity on the Immune Control of HIV
von: Leslie, A, et al.
Veröffentlicht: (2008)

RNA-Seq dataset generated from stimulation of cultured Tc2 cells
von: Hoyle, R
Veröffentlicht: (2021)