RNA2HLA: HLA-based quality control of RNA-seq datasets

RNA2HLA: HLA-based quality control of RNA-seq datasets

RNA-sequencing (RNA-seq) is a widely used approach for accessing the transcriptome in biomedical research. Studies frequently include multiple samples taken from the same individual at various time points or under different conditions, correct assignment of those samples to each particular participa...

Volledige beschrijving

Bibliografische gegevens
Hoofdauteurs:	Chelysheva, I, Pollard, AJ, O’Connor, D
Formaat:	Journal article
Taal:	English
Gepubliceerd in:	Oxford University Press 2021

Gelijkaardige items

Correction: HLA Haplotyping from RNA-seq Data Using Hierarchical Read Weighting.
Gepubliceerd in: (2014-01-01)

Correction: HLA Haplotyping from RNA-seq Data Using Hierarchical Read Weighting
Gepubliceerd in: (2014-01-01)

MiRNA-mediated control of HLA-G expression and function.
door: Irit Manaster, et al.
Gepubliceerd in: (2012-01-01)

HLA diversity in the 1000 genomes dataset.
door: Pierre-Antoine Gourraud, et al.
Gepubliceerd in: (2014-01-01)

Expressions of HLA Class II Genes in Cutaneous Melanoma Were Associated with Clinical Outcome: Bioinformatics Approaches and Systematic Analysis of Public Microarray and RNA-Seq Datasets
door: Yang-Yi Chen, et al.
Gepubliceerd in: (2019-06-01)

Tetrameric complexes of HLA-E, HLA-F, and HLA-G.
door: Allan, D, et al.
Gepubliceerd in: (2002)

HLAProfiler utilizes k-mer profiles to improve HLA calling accuracy for rare and common alleles in RNA-seq data
door: Martin L. Buchkovich, et al.
Gepubliceerd in: (2017-09-01)

Diversity in the HLA-I Recognition of HLA-F Monoclonal Antibodies: HLA-F or HLA-Ib Monospecific, HLA-E or HLA-G Bispecific Antibodies with or without HLA-Ia Reactivity
door: Mepur H. Ravindranath, et al.
Gepubliceerd in: (2024-01-01)

RNA splicing analysis using heterogeneous and large RNA-seq datasets
door: Jorge Vaquero-Garcia, et al.
Gepubliceerd in: (2023-03-01)

O sistema HLA <br>The HLA
door: Aldo Waldrigues
Gepubliceerd in: (1981-11-01)

Discovery of protein-lncRNA interactions by integrating large-scale CLIP-Seq and RNA-Seq datasets
door: Jun-Hao eLi, et al.
Gepubliceerd in: (2015-01-01)

MicroRNA Variants and HLA-miRNA Interactions are Novel Rheumatoid Arthritis Susceptibility Factors
door: Shicheng Guo, et al.
Gepubliceerd in: (2021-10-01)

HLA*LA—HLA typing from linearly projected graph alignments
door: Dilthey, AT, et al.
Gepubliceerd in: (2019)

High resolution allele frequency analysis of HLA-A, HLA-B, HLA-DRB1, HLA-C, HLA-DQB1 and HLA-DPB1 in Guangdong Cord Blood Bank
door: RUI Derong, et al.
Gepubliceerd in: (2024-11-01)

Processing single-cell RNA-seq datasets using SingCellaR
door: Wang, G, et al.
Gepubliceerd in: (2022)

An Expanded Role for HLA Genes: HLA-B Encodes a microRNA that Regulates IgA and Other Immune Response Transcripts
door: Nilesh Chitnis, et al.
Gepubliceerd in: (2017-05-01)

Chapter 1 HLA-Mediated Control of HIV and HIV Adaptation to HLA
door: Payne, R, et al.
Gepubliceerd in: (2009)

Structure and function of the human MHC class Ib molecules HLA-E, HLA-F and HLA-G.
door: O'Callaghan, C, et al.
Gepubliceerd in: (1998)

Spotlight on systems vaccinology: a novel approach to elucidate correlates of protection
door: Zhu, H, et al.
Gepubliceerd in: (2023)

GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure
door: John A. Hadish, et al.
Gepubliceerd in: (2022-05-01)

Targeted RNA-Based Oxford Nanopore Sequencing for Typing 12 Classical HLA Genes
door: Tiira Johansson, et al.
Gepubliceerd in: (2021-03-01)

HLA and non-HLA polymorphisms in renal transplantation
door: Stéphanie Laperrousaz, et al.
Gepubliceerd in: (2012-08-01)

Identification of a novel HLA-A2 subtype, HLA-A*0216.
door: Barouch, D, et al.
Gepubliceerd in: (1995)

High-sensitivity HLA typing by Saturated Tiling Capture Sequencing (STC-Seq)
door: Yang Jiao, et al.
Gepubliceerd in: (2018-01-01)

HLA-H: Transcriptional Activity and HLA-E Mobilization
door: François Jordier, et al.
Gepubliceerd in: (2020-01-01)

Tuning of NK-Specific HLA-C Expression by Alternative mRNA Splicing
door: Frederick J. Goodson-Gregg, et al.
Gepubliceerd in: (2020-01-01)

Statistical HLA type imputation from large and heterogeneous datasets
door: Dilthey, A
Gepubliceerd in: (2012)

DIFFERENTIAL IMPACT OF HLA-A, HLA-B AND HLA-DR COMPATIBILITY ON THE RENAL ALLOGRAFT SURVIVAL
door: V. Y. Abramov, et al.
Gepubliceerd in: (2012-09-01)

Antigens HLA-G, sHLA- G and sHLA- class I in reproductive failure.
door: Tomasz Plonka, et al.
Gepubliceerd in: (2008-04-01)

The Molecular Origin and Consequences of Escape from miRNA Regulation by HLA-C Alleles
door: O'hUigin, Colm, et al.
Gepubliceerd in: (2011)

Integrated analysis of single‐cell RNA‐seq dataset and bulk RNA‐seq dataset constructs a prognostic model for predicting survival in human glioblastoma
door: Wenwen Lai, et al.
Gepubliceerd in: (2022-05-01)

Symposium 6: HLA and Non-HLA genetic predisposition
door: Gloria Cerrone
Gepubliceerd in: (2020-11-01)

Elevated neoantigen levels in tumors with somatic mutations in the HLA-A, HLA-B, HLA-C and B2M genes
door: Andrea Castro, et al.
Gepubliceerd in: (2019-07-01)

Identification of presented SARS-CoV-2 HLA class I and HLA class II peptides using HLA peptidomics
door: Adi Nagler, et al.
Gepubliceerd in: (2021-06-01)

IDENTIFICATION OF A NOVEL HLA-A2 SUBTYPE, HLA-A-ASTERISK-0216
door: Barouch, D, et al.
Gepubliceerd in: (1995)

HLA RNA Sequencing With Unique Molecular Identifiers Reveals High Allele-Specific Variability in mRNA Expression
door: Tiira Johansson, et al.
Gepubliceerd in: (2021-02-01)

Choice of pre-processing pipeline influences clustering quality of scRNA-seq datasets
door: Inbal Shainer, et al.
Gepubliceerd in: (2021-09-01)

RNA-QC-chain: comprehensive and fast quality control for RNA-Seq data
door: Qian Zhou, et al.
Gepubliceerd in: (2018-02-01)

Revisiting the Influence of HLA-type, Frequency, HLA-supertype and Homozygosity on the Immune Control of HIV
door: Leslie, A, et al.
Gepubliceerd in: (2008)

RNA-Seq dataset generated from stimulation of cultured Tc2 cells
door: Hoyle, R
Gepubliceerd in: (2021)