Membrane protein structure quality in molecular dynamics simulation.

Membrane protein structure quality in molecular dynamics simulation.

Our goal was to assess the relationship between membrane protein quality, output from protein quality checkers and output from molecular dynamics (MD) simulations. Membrane transport proteins are essential for a wide range of cellular processes. Structural features of integral membrane proteins are...

وصف كامل

التفاصيل البيبلوغرافية
المؤلفون الرئيسيون:	Law, R, Capener, C, Baaden, M, Bond, P, Campbell, J, Patargias, G, Arinaminpathy, Y, Sansom, MS
التنسيق:	Conference item
منشور في:	2005

مواد مشابهة

Molecular dynamics simulations of GlpF in a micelle vs in a bilayer: conformational dynamics of a membrane protein as a function of environment.
حسب: Patargias, G, وآخرون
منشور في: (2005)

Conformational sampling and dynamics of membrane proteins from 10-nanosecond computer simulations.
حسب: Faraldo-Gómez, J, وآخرون
منشور في: (2004)

OmpT: molecular dynamics simulations of an outer membrane enzyme.
حسب: Baaden, M, وآخرون
منشور في: (2004)

Molecular dynamics simulations and membrane protein structure quality.
حسب: Ivetac, A, وآخرون
منشور في: (2008)

OmpT: Molecular dynamics simulations of an outer membrane enzyme.
حسب: Baaden, M, وآخرون
منشور في: (2005)

Outer membrane proteins: comparing X-ray and NMR structures by MD simulations in lipid bilayers.
حسب: Cox, K, وآخرون
منشور في: (2008)

Molecular dynamics simulations of outer membrane phospholipase A
حسب: Baaden, M, وآخرون
منشور في: (2004)

Molecular dynamics simulations exploring the KcsA structure
حسب: Capener, C, وآخرون
منشور في: (2002)

Interdomain dynamics and ligand binding: molecular dynamics simulations of glutamine binding protein.
حسب: Pang, A, وآخرون
منشور في: (2003)

Membrane proteins: molecular dynamics simulations.
حسب: Lindahl, E, وآخرون
منشور في: (2008)

Molecular dynamics simulations of a K channel model: Sensitivity to changes in ions, waters, and membrane environment
حسب: Capener, C, وآخرون
منشور في: (2002)

Coarse-grained molecular dynamics simulations of membrane proteins and peptides.
حسب: Bond, P, وآخرون
منشور في: (2007)

Ion channels: structural bioinformatics and modelling.
حسب: Capener, C, وآخرون
منشور في: (2002)

Molecular Dynamics simulations of spontaneous micelle formation around membrane proteins.
حسب: Bond, P, وآخرون
منشور في: (2005)

A molecular dynamics investigation of mono and dimeric states of the outer membrane enzyme OMPLA.
حسب: Baaden, M, وآخرون
منشور في: (2003)

Coarse-grain simulations of the R-SNARE fusion protein in its membrane environment detect long-lived conformational sub-states.
حسب: Durrieu, M, وآخرون
منشور في: (2009)

Simulations of bacterial outer membrane proteins: Towards an e-outer membrane
حسب: Baaden, M, وآخرون
منشور في: (2003)

Molecular dynamics simulations of the ligand-binding domain of the ionotropic glutamate receptor GluR2.
حسب: Arinaminpathy, Y, وآخرون
منشور في: (2002)

Self-assembly of a simple membrane protein: coarse-grained molecular dynamics simulations of the influenza M2 channel.
حسب: Carpenter, T, وآخرون
منشور في: (2008)

The simulation approach to bacterial outer membrane proteins.
حسب: Bond, P, وآخرون
منشور في: (2004)

Insertion and assembly of membrane proteins via simulation.
حسب: Bond, P, وآخرون
منشور في: (2006)

Membrane protein dynamics versus environment: simulations of OmpA in a micelle and in a bilayer.
حسب: Bond, P, وآخرون
منشور في: (2003)

Molecular simulation approaches to membrane proteins.
حسب: Stansfeld, P, وآخرون
منشور في: (2011)

Membrane protein simulations: ion channels and bacterial outer membrane proteins.
حسب: Domene, C, وآخرون
منشور في: (2003)

Homology modelling and molecular dynamics simulations of a prokaryotic glutamate receptor: GluR0
حسب: Arinaminpathy, Y, وآخرون
منشور في: (2002)

One membrane protein, two structures and six environments: a comparative molecular dynamics simulation study of the bacterial outer membrane protein PagP.
حسب: Cox, K, وآخرون
منشور في: (2009)

Molecular simulations and lipid-protein interactions: potassium channels and other membrane proteins.
حسب: Sansom, MS, وآخرون
منشور في: (2005)

Molecular dynamics simulations of membrane proteins.
حسب: Biggin, P, وآخرون
منشور في: (2008)

A prokaryotic glutamate receptor: homology modelling and molecular dynamics simulations of GluR0.
حسب: Arinaminpathy, Y, وآخرون
منشور في: (2003)

BioSimGRID: Application to analysis of membrane protein simulations
حسب: Sansom, M, وآخرون
منشور في: (2005)

Comparative molecular dynamics simulations: Glutamate receptors and periplasmic binding proteins
حسب: Sansom, M, وآخرون
منشور في: (2004)

Extending the structure of an ABC transporter to atomic resolution: modeling and simulation studies of MsbA.
حسب: Campbell, J, وآخرون
منشور في: (2003)

Structure and dynamics of K channel pore-lining helices: a comparative simulation study.
حسب: Shrivastava, I, وآخرون
منشور في: (2000)

Simulation studies of the interactions between membrane proteins and detergents.
حسب: Bond, P, وآخرون
منشور في: (2005)

Binding site flexibility: molecular simulation of partial and full agonists within a glutamate receptor.
حسب: Arinaminpathy, Y, وآخرون
منشور في: (2006)

CGDB: a database of membrane protein/lipid interactions by coarse-grained molecular dynamics simulations.
حسب: Chetwynd, A, وآخرون
منشور في: (2008)

Conformational dynamics of OmpA: MD simulations of a bacterial outer membrane protein
حسب: Bond, P, وآخرون
منشور في: (2004)

A brief history of visualizing membrane systems in molecular dynamics simulations
حسب: R. A. Corey, وآخرون
منشور في: (2023-05-01)

OmpA: gating and dynamics via molecular dynamics simulations.
حسب: Khalid, S, وآخرون
منشور في: (2008)

Homology modeling and molecular dynamics simulation studies of an inward rectifier potassium channel.
حسب: Capener, C, وآخرون
منشور في: (2000)