MOST: a modified MLST typing tool based on short read sequencing

MOST: a modified MLST typing tool based on short read sequencing

Multilocus sequence typing (MLST) is an effective method to describe bacterial populations. Conventionally, MLST involves Polymerase Chain Reaction (PCR) amplification of housekeeping genes followed by Sanger DNA sequencing. Public Health England (PHE) is in the process of replacing the conventional...

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Bibliografiske detaljer
Main Authors:	Tewolde, R, Dallman, T, Schaefer, U, Sheppard, C, Ashton, P, Pichon, B, Ellington, M, Swift, C, Green, J, Underwood, A
Format:	Journal article
Sprog:	English
Udgivet:	PeerJ 2016

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af: Boonsilp, S, et al.
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af: Inouye Michael, et al.
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af: Nielsen, L, et al.
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af: Margos, G, et al.
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