MOST: a modified MLST typing tool based on short read sequencing

MOST: a modified MLST typing tool based on short read sequencing

Multilocus sequence typing (MLST) is an effective method to describe bacterial populations. Conventionally, MLST involves Polymerase Chain Reaction (PCR) amplification of housekeeping genes followed by Sanger DNA sequencing. Public Health England (PHE) is in the process of replacing the conventional...

Bibliográfalaš dieđut
Váldodahkkit:	Tewolde, R, Dallman, T, Schaefer, U, Sheppard, C, Ashton, P, Pichon, B, Ellington, M, Swift, C, Green, J, Underwood, A
Materiálatiipa:	Journal article
Giella:	English
Almmustuhtton:	PeerJ 2016

Geahča maid

MOST: a modified MLST typing tool based on short read sequencing
Dahkki: Rediat Tewolde, et al.
Almmustuhtton: (2016-08-01)

Identification of Salmonella for public health surveillance using whole genome sequencing
Dahkki: Ashton, P, et al.
Almmustuhtton: (2016)

mlstdbNet – distributed multi-locus sequence typing (MLST) databases
Dahkki: Maiden Martin CJ, et al.
Almmustuhtton: (2004-07-01)

Comparing core-genome MLST with PFGE and MLST for cluster analysis of carbapenem-resistant Acinetobacter baumannii
Dahkki: Tingting Li, et al.
Almmustuhtton: (2022-09-01)

The applied development of a tiered multilocus sequence typing (MLST) scheme for Dichelobacter nodosus
Dahkki: Blanchard, A, et al.
Almmustuhtton: (2018)

Comparative analysis of the two Acinetobacter baumannii multilocus sequence typing (MLST) schemes
Dahkki: Gaiarsa, S, et al.
Almmustuhtton: (2019)

Comparative Analysis of the Two Acinetobacter baumannii Multilocus Sequence Typing (MLST) Schemes
Dahkki: Stefano Gaiarsa, et al.
Almmustuhtton: (2019-05-01)

The Applied Development of a Tiered Multilocus Sequence Typing (MLST) Scheme for Dichelobacter nodosus
Dahkki: Adam M. Blanchard, et al.
Almmustuhtton: (2018-03-01)

A single multilocus sequence typing (MLST) scheme for seven pathogenic Leptospira species
Dahkki: Boonsilp, S, et al.
Almmustuhtton: (2013)

Short read sequence typing (SRST): multi-locus sequence types from short reads
Dahkki: Inouye Michael, et al.
Almmustuhtton: (2012-07-01)

Campylobacter from retail poultry: MLST analysis and the origin of human infection
Dahkki: Sheppard, S, et al.
Almmustuhtton: (2007)

Subtyping Salmonella isolated from pet dogs with multilocus sequence typing (MLST) and clustered regularly interspaced short palindromic repeats (CRISPRs)
Dahkki: Cheng Yang, et al.
Almmustuhtton: (2021-04-01)

Unlocking short read sequencing for metagenomics.
Dahkki: Sébastien Rodrigue, et al.
Almmustuhtton: (2010-07-01)

refMLST: reference-based multilocus sequence typing enables universal bacterial typing
Dahkki: Mondher Khdhiri, et al.
Almmustuhtton: (2024-08-01)

Assessment of genetic markers for multilocus sequence typing (MLST) of Fasciola isolates from Iran
Dahkki: Naser Nazari, et al.
Almmustuhtton: (2023-03-01)

First multilocus sequence typing (MLST) of Giardia duodenalis isolates from humans in Romania
Dahkki: Carmen Costache, et al.
Almmustuhtton: (2020-07-01)

A single multilocus sequence typing (MLST) scheme for seven pathogenic Leptospira species.
Dahkki: Siriphan Boonsilp, et al.
Almmustuhtton: (2013-01-01)

Generation of diversity in Streptococcus mutans genes demonstrated by MLST.
Dahkki: Thuy Do, et al.
Almmustuhtton: (2010-02-01)

cgMLST@Taiwan: A web service platform for Vibrio cholerae cgMLST profiling and global strain tracking
Dahkki: Yi-Syong Chen, et al.
Almmustuhtton: (2022-02-01)

Serotyping, MLST, and Core Genome MLST Analysis of Salmonella enterica From Different Sources in China During 2004–2019
Dahkki: Shigan Yan, et al.
Almmustuhtton: (2021-09-01)

Application of MLST and pilus gene sequence comparisons to investigate the population structures of Actinomyces naeslundii and Actinomyces oris.
Dahkki: Uta Henssge, et al.
Almmustuhtton: (2011-01-01)

Unlocking Short Read Sequencing for Metagenomics
Dahkki: Chisholm, Sallie (Penny), et al.
Almmustuhtton: (2010)

SimMLST: simulation of multi-locus sequence typing data under a neutral model.
Dahkki: Didelot, X, et al.
Almmustuhtton: (2009)

Genotyping of <it>B. licheniformis</it> based on a novel multi-locus sequence typing (MLST) scheme
Dahkki: Madslien Elisabeth H, et al.
Almmustuhtton: (2012-10-01)

Multilocus sequence typing (MLST) for lineage assignment and high resolution diversity studies in Trypanosoma cruzi.
Dahkki: Matthew Yeo, et al.
Almmustuhtton: (2011-06-01)

Correction to: First multilocus sequence typing (MLST) of Giardia duodenalis isolates from humans in Romania
Dahkki: Carmen Costache, et al.
Almmustuhtton: (2021-06-01)

FastMLST: A Multi-core Tool for Multilocus Sequence Typing of Draft Genome Assemblies
Dahkki: Enzo Guerrero-Araya, et al.
Almmustuhtton: (2021-11-01)

Exploring the diversity of Arcobacter butzleri from cattle in the UK using MLST and whole genome sequencing.
Dahkki: J Yvette Merga, et al.
Almmustuhtton: (2013-01-01)

MLST clustering of Campylobacter jejuni isolates from patients with gastroenteritis, reactive arthritis and Guillain-Barre syndrome.
Dahkki: Nielsen, L, et al.
Almmustuhtton: (2010)

Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing.
Dahkki: James A Stapleton, et al.
Almmustuhtton: (2016-01-01)

PubMLST.org – The new home for the Borrelia MLSA database
Dahkki: Margos, G, et al.
Almmustuhtton: (2015)

Application of a core genome sequence typing (cgMLST) pipeline for surveillance of Clostridioides difficile in China
Dahkki: Yuan Yuan Wang, et al.
Almmustuhtton: (2023-03-01)

Multiple mitochondrial introgression events and heteroplasmy in trypanosoma cruzi revealed by maxicircle MLST and next generation sequencing.
Dahkki: Louisa A Messenger, et al.
Almmustuhtton: (2012-01-01)

Comparison of MultiLocus Sequence Typing (MLST) and Microsatellite Length Polymorphism (MLP) for Pneumocystis jirovecii genotyping
Dahkki: Maud Gits-Muselli, et al.
Almmustuhtton: (2020-01-01)

DNA-Sequence Based Typing of the Cronobacter Genus Using MLST, CRISPR-cas Array and Capsular Profiling
Dahkki: Pauline Ogrodzki, et al.
Almmustuhtton: (2017-09-01)

An Extended Multilocus Sequence Typing (MLST) Scheme for Rapid Direct Typing of Leptospira from Clinical Samples.
Dahkki: Sabrina Weiss, et al.
Almmustuhtton: (2016-09-01)

MLST revisited: the gene-by-gene approach to bacterial genomics.
Dahkki: Maiden, M, et al.
Almmustuhtton: (2013)

Core Genome MLST for Source Attribution of Campylobacter coli
Dahkki: Lucas Harrison, et al.
Almmustuhtton: (2021-07-01)

Comparative analysis of IR-Biotyper, MLST, cgMLST, and WGS for clustering of vancomycin-resistant Enterococcus faecium in a neonatal intensive care unit
Dahkki: Sunggyun Park, et al.
Almmustuhtton: (2024-04-01)

Targeted assembly of short sequence reads.
Dahkki: René L Warren, et al.
Almmustuhtton: (2011-01-01)