Rapid genotype imputation from sequence without reference panels

Rapid genotype imputation from sequence without reference panels

Inexpensive genotyping methods are essential for genetic studies requiring large sample sizes. In human studies, array-based microarrays and high-density haplotype reference panels allow efficient genotype imputation for this purpose. However, these resources are typically unavailable in non-human s...

Descripció completa

Dades bibliogràfiques
Autors principals:	Myers, S, Davies, R, Flint, J, Mott, R
Format:	Journal article
Publicat:	Nature Publishing Group 2016

Ítems similars

Rapid genotype imputation from sequence with reference panels
per: Davies, RW, et al.
Publicat: (2021)

A reference panel of 64,976 haplotypes for genotype imputation
per: Kretzschmar, W, et al.
Publicat: (2016)

Development and validation of a horse reference panel for genotype imputation
per: Paula Reich, et al.
Publicat: (2022-07-01)

PHARP: a pig haplotype reference panel for genotype imputation
per: Zhen Wang, et al.
Publicat: (2022-07-01)

Rapid, Reference-Free human genotype imputation with denoising autoencoders
per: Raquel Dias, et al.
Publicat: (2022-09-01)

A genotype imputation reference panel specific for native Southeast Asian populations
per: Alvin Cengnata, et al.
Publicat: (2024-10-01)

Author Correction: PHARP: a pig haplotype reference panel for genotype imputation
per: Zhen Wang, et al.
Publicat: (2022-08-01)

A population-specific reference panel for improved genotype imputation in African Americans
per: Jared O’Connell, et al.
Publicat: (2021-11-01)

Comparison of genotype imputation strategies using a combined reference panel for chicken population
per: S. Ye, et al.
Publicat: (2019-01-01)

Optimizing Selection of the Reference Population for Genotype Imputation From Array to Sequence Variants
per: Adrien M. Butty, et al.
Publicat: (2019-05-01)

Genotype Imputation for Latinos Using the HapMap and 1000 Genomes Project Reference Panels
per: Xiaoyi eGao, et al.
Publicat: (2012-06-01)

A rapid and reference-free imputation method for low-cost genotyping platforms
per: Vinh Chi Duong, et al.
Publicat: (2023-12-01)

A diverse ancestrally-matched reference panel increases genotype imputation accuracy in a underrepresented population
per: John Mauleekoonphairoj, et al.
Publicat: (2023-07-01)

Development and evaluation of a haplotype reference panel for low-coverage whole genome sequencing genotype imputation in turbot (Scophthalmus maximus)
per: Junwen Cao, et al.
Publicat: (2025-04-01)

MergeReference: A Tool for Merging Reference Panels for HLA Imputation
per: Seungho Cook, et al.
Publicat: (2017-09-01)

The size and composition of haplotype reference panels impact the accuracy of imputation from low-pass sequencing in cattle
per: Audald Lloret-Villas, et al.
Publicat: (2023-05-01)

How local reference panels improve imputation in French populations
per: Anthony F. Herzig, et al.
Publicat: (2024-01-01)

Reconstruction of private genomes through reference-based genotype imputation
per: Matthew J. Mosca, et al.
Publicat: (2023-12-01)

Imputation accuracy of wheat genotyping-by-sequencing (GBS) data using barley and wheat genome references.
per: Hadi Alipour, et al.
Publicat: (2019-01-01)

Utilizing genotype imputation for the augmentation of sequence data.
per: Brooke L Fridley, et al.
Publicat: (2010-06-01)

Genotype Imputation
per: Marchini, J
Publicat: (2011)

A globally diverse reference alignment and panel for imputation of mitochondrial DNA variants
per: Tim W. McInerney, et al.
Publicat: (2021-09-01)

Inclusion of Population-specific Reference Panel from India to the 1000 Genomes Phase 3 Panel Improves Imputation Accuracy
per: Meraj Ahmad, et al.
Publicat: (2017-07-01)

Evaluation of imputation performance of multiple reference panels in a Pakistani population
per: Jiayi Xu, et al.
Publicat: (2025-04-01)

Imputation of missing genotypes: an empirical evaluation of IMPUTE
per: Steinberg Martin H, et al.
Publicat: (2008-12-01)

Genotype imputation strategies for Portuguese Holstein cattle using different SNP panels
per: Alessandra Alves Silva, et al.
Publicat: (2019-09-01)

A reference haplotype panel for genome-wide imputation of short tandem repeats
per: Shubham Saini, et al.
Publicat: (2018-10-01)

Rare Variants Imputation in Admixed Populations: Comparison Across Reference Panels and Bioinformatics Tools
per: Sanjeev Sariya, et al.
Publicat: (2019-04-01)

Comparing algorithms for genotype imputation.
per: Marchini, J, et al.
Publicat: (2008)

Genotype imputation with thousands of genomes.
per: Howie, B, et al.
Publicat: (2011)

Improved imputation accuracy of rare and low-frequency variants using population-specific high-coverage WGS-based imputation reference panel
per: Mitt, Mario, et al.
Publicat: (2018)

Regional genetic differences among Japanese populations and performance of genotype imputation using whole-genome reference panel of the Tohoku Medical Megabank Project
per: Jun Yasuda, et al.
Publicat: (2018-07-01)

Novel methods for genotype imputation to whole-genome sequence and a simple linear model to predict imputation accuracy
per: Steven G. Larmer, et al.
Publicat: (2017-12-01)

Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel
per: Huang, J, et al.
Publicat: (2015)

Comparison of multiple imputation and other methods for the analysis of imputed genotypes
per: Paul L. Auer, et al.
Publicat: (2023-06-01)

Evaluating Imputation Algorithms for Low-Depth Genotyping-By-Sequencing (GBS) Data.
per: Ariel W Chan, et al.
Publicat: (2016-01-01)

Current software for genotype imputation
per: Ellinghaus David, et al.
Publicat: (2009-07-01)

The SWine IMputation (SWIM) haplotype reference panel enables nucleotide resolution genetic mapping in pigs
per: Rongrong Ding, et al.
Publicat: (2023-05-01)

The NBDC-DDBJ imputation server facilitates the use of controlled access reference panel datasets in Japan
per: Tsuyoshi Hachiya, et al.
Publicat: (2022-12-01)

A multi-breed reference panel and additional rare variants maximize imputation accuracy in cattle
per: Troy N. Rowan, et al.
Publicat: (2019-12-01)