The interplay of supercoiling and thymine dimers in DNA

The interplay of supercoiling and thymine dimers in DNA

Thymine dimers are a major mutagenic photoproduct induced by UV radiation. While they have been the subject of extensive theoretical and experimental investigations, questions of how DNA supercoiling affects local defect properties, or, conversely, how the presence of such defects changes global sup...

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Xehetasun bibliografikoak
Egile Nagusiak:	Lim, W, Randisi, F, Doye, JPK, Louis, AA
Formatua:	Journal article
Hizkuntza:	English
Argitaratua:	Oxford University Press 2022

Antzeko izenburuak

Coarse-grained modelling of supercoiled RNA
nork: Matek, C, et al.
Argitaratua: (2015)

Plectoneme tip bubbles : coupled denaturation and writhing in supercoiled DNA
nork: Matek, C, et al.
Argitaratua: (2015)

How Does Thymine DNA Survive Ultrafast Dimerization Damage?
nork: Hongjuan Wang, et al.
Argitaratua: (2016-12-01)

Structural interplay between DNA-shape protein recognition and supercoiling: The case of IHF
nork: George D. Watson, et al.
Argitaratua: (2022-01-01)

Supercoils in human DNA.
nork: Cook, P, et al.
Argitaratua: (1975)

Measuring internal forces in single-stranded DNA: application to a DNA force clamp
nork: Engel, MC, et al.
Argitaratua: (2020)

DNA sequence encodes the position of DNA supercoils
nork: Sung Hyun Kim, et al.
Argitaratua: (2018-12-01)

A Compass at Weak Magnetic Fields Using Thymine Dimer Repair
nork: Theodore J. Zwang, et al.
Argitaratua: (2018-03-01)

Theory and simulation of DNA damage and supercoiling
nork: Selby, M
Argitaratua: (2023)

The study of G-quadruplex in supercoiled DNA
nork: Lv, Bei
Argitaratua: (2016)

Role of Supercoiling and Topoisomerases in DNA Knotting
nork: Jorge Cebrián, et al.
Argitaratua: (2024-05-01)

Control of bacterrial DNA supercoiling : microreview /
nork: 397617 Drlica, Karl

Force-induced rupture of a DNA duplex: from fundamentals to force sensors
nork: Mosayebi, M, et al.
Argitaratua: (2015)

Reply to Ocklenburg and Mundorf: the interplay of developmental bias and natural selection
nork: Johnston, IG, et al.
Argitaratua: (2022)

Novel Expression of Thymine Dimers in Renal Cell Carcinoma, Demonstrated through Immunohistochemistry
nork: Dorin Novacescu, et al.
Argitaratua: (2022-10-01)

The effect of supercoiling on small molecule-DNA interactions
nork: LaMarr, William Albino, 1969-
Argitaratua: (2010)

SUPERCOILS IN NUCLEAR-DNA AND REPAIR OF RADIATION-DAMAGE
nork: Cook, P, et al.
Argitaratua: (1977)

Coarse-grained modelling of DNA-RNA hybrids
nork: Ratajczyk, EJ, et al.
Argitaratua: (2023)

Counterintuitive DNA Sequence Dependence in Supercoiling-Induced DNA Melting.
nork: Rifka Vlijm, et al.
Argitaratua: (2015-01-01)

Supercoiling of DNA and nuclear conformation during the cell-cycle.
nork: Warren, A, et al.
Argitaratua: (1978)

HU of Streptococcus pneumoniae Is Essential for the Preservation of DNA Supercoiling
nork: María-José Ferrándiz, et al.
Argitaratua: (2018-03-01)

Analysis of the structural changes caused by positive DNA supercoiling
nork: Barth, Marita Christine
Argitaratua: (2008)

The free-energy landscape of a mechanically bistable DNA origami
nork: Wong, CK, et al.
Argitaratua: (2022)

Kinetic Study of DNA Topoisomerases by Supercoiling-Dependent Fluorescence Quenching
nork: Yunke Wang, et al.
Argitaratua: (2019-10-01)

Direct simulation of the self-assembly of a small DNA origami
nork: Snodin, BEK, et al.
Argitaratua: (2016)

Differential Effects of Biomimetic Thymine Dimers and Corresponding Photo-Adducts in Primary Human Keratinocytes and Fibroblasts
nork: Rosanna Monetta, et al.
Argitaratua: (2024-11-01)

Flavonols Protect Against UV Radiation-Induced Thymine Dimer Formation in an Artificial Skin Mimic
nork: Sabia Maini, et al.
Argitaratua: (2015-10-01)

mwr Xer site-specific recombination is hypersensitive to DNA supercoiling
nork: Trigueros, S, et al.
Argitaratua: (2009)

Oncofetal HMGA2 effectively curbs unconstrained (+) and (−) DNA supercoiling
nork: Zhao, Xiaodan, et al.
Argitaratua: (2018)

mwr Xer site-specific recombination is hypersensitive to DNA supercoiling.
nork: Trigueros, S, et al.
Argitaratua: (2009)

Evaluation of novel chromatographic prototypes for supercoiled plasmid DNA polishing
nork: Pedro L. Ferreira, et al.
Argitaratua: (2024-01-01)

DNA Supercoiling: an Ancestral Regulator of Gene Expression in Pathogenic Bacteria?
nork: Shiny Martis B., et al.
Argitaratua: (2019-01-01)

DNA supercoiling and transcription in bacteria: a two-way street
nork: Charles J. Dorman
Argitaratua: (2019-07-01)

Supercoiling Effects on Short-Range DNA Looping in E. coli.
nork: Lauren S Mogil, et al.
Argitaratua: (2016-01-01)

Rates of gyrase supercoiling and transcription elongation control supercoil density in a bacterial chromosome.
nork: Nikolay Rovinskiy, et al.
Argitaratua: (2012-01-01)

Electrophoretic Mobility Assay to Separate Supercoiled, Catenated, and Knotted DNA Molecules
nork: Jorge Cebrián, et al.
Argitaratua: (2024-05-01)

DNA supercoiling differences in bacteria result from disparate DNA gyrase activation by polyamines.
nork: Alexandre Duprey, et al.
Argitaratua: (2020-10-01)

Base excision by thymine DNA glycosylase mediates DNA-directed cytotoxicity of 5-fluorouracil.
nork: Christophe Kunz, et al.
Argitaratua: (2009-04-01)

Asymmetric removal of supercoils suggests how topoisomerase II simplifies DNA topology.
nork: Trigueros, S, et al.
Argitaratua: (2004)

Chromatin architectural factors as safeguards against excessive supercoiling during DNA replication
nork: Ahmed, Syed Moiz, et al.
Argitaratua: (2021)