Oxfold: kinetic folding of RNA using stochastic context-free grammars and evolutionary information.

MOTIVATION: Many computational methods for RNA secondary structure prediction, and, in particular, for the prediction of a consensus structure of an alignment of RNA sequences, have been developed. Most methods, however, ignore biophysical factors, such as the kinetics of RNA folding; no current im...

Full description

Bibliographic Details
Main Authors: Anderson, J, Haas, P, Mathieson, L, Volynkin, V, Lyngsø, R, Tataru, P, Hein, J
Format: Journal article
Language:English
Published: 2013