Subtraction-free and bisulfite-free specific sequencing of 5-methylcytosine and its oxidized derivatives at base resolution

Subtraction-free and bisulfite-free specific sequencing of 5-methylcytosine and its oxidized derivatives at base resolution

Although various methods have been developed for sequencing cytosine modifications, it is still challenging for specific and quantitative sequencing of individual modification at base-resolution. For example, to obtain both true 5-methylcytosine (5mC) and true 5-hydroxymethylcytosine (5hmC) informat...

Bibliografske podrobnosti
Main Authors:	Liu, Y, Hu, Z, Cheng, J, Siejka-Zielinska, P, Chen, J, Inoue, M, Ahmed, A, Song, C
Format:	Journal article
Jezik:	English
Izdano:	Springer Nature 2021

Podobne knjige/članki

Subtraction-free and bisulfite-free specific sequencing of 5-methylcytosine and its oxidized derivatives at base resolution
od: Yibin Liu, et al.
Izdano: (2021-01-01)

Bisulfite-free direct detection of 5-methylcytosine and 5-hydroxymethylcytosine at base resolution
od: Liu, Y, et al.
Izdano: (2019)

Development of bisulfite-free DNA methylation sequencing methods and their application to cell-free DNA for cancer detection
od: Siejka-Zielinska, P
Izdano: (2020)

Bisulfite-free and base-resolution analysis of 5-methylcytidine and 5-hydroxymethylcytidine in RNA with peroxotungstate
od: Yuan, F, et al.
Izdano: (2019)

TAPS: a bisulfite-free, base-resolution and quantitative sequencing method for cytosine modifications
od: Liu, Y, et al.
Izdano: (2019)

Optimized bisulfite sequencing analysis reveals the lack of 5-methylcytosine in mammalian mitochondrial DNA
od: Zhenyu Shao, et al.
Izdano: (2023-08-01)

Enzymatic approaches and bisulfite sequencing cannot distinguish between 5-methylcytosine and 5-hydroxymethylcytosine in DNA
od: Colm Nestor, et al.
Izdano: (2010-04-01)

Use of a Single Sequencing Termination Reaction to Distinguish Between Cytosine and 5-Methylcytosine in Bisulfite-Modified DNA
od: Zhou Yuanxiang, et al.
Izdano: (1997-05-01)

Accurate measurement of 5-methylcytosine and 5-hydroxymethylcytosine in human cerebellum DNA by oxidative bisulfite on an array (OxBS-array).
od: Sarah F Field, et al.
Izdano: (2015-01-01)

Bisulfite Amplicon Sequencing Can Detect Glia and Neuron Cell-Free DNA in Blood Plasma
od: Zac Chatterton, et al.
Izdano: (2021-07-01)

Whole-Genome Sequencing of 5‑Hydroxymethylcytosine at Base Resolution by Bisulfite-Free Single-Step Deamination with Engineered Cytosine Deaminase
od: Neng-Bin Xie, et al.
Izdano: (2023-11-01)

BS Seeker: precise mapping for bisulfite sequencing
od: Pellegrini Matteo, et al.
Izdano: (2010-04-01)

LABS: linear amplification-based bisulfite sequencing for ultrasensitive cancer detection from cell-free DNA
od: Xiao-Long Cui, et al.
Izdano: (2024-06-01)

Reduced Representation Bisulfite Sequencing in Maize
od: Fei-Man Hsu, et al.
Izdano: (2018-03-01)

Genome-wide oxidative bisulfite sequencing identifies sex-specific methylation differences in the human placenta
od: Sungsam Gong, et al.
Izdano: (2018-03-01)

Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis
od: Meissner, Alexander, et al.
Izdano: (2012)

Whole-genome bisulfite sequencing of cell-free DNA unveils age-dependent and ALS-associated methylation alterations
od: Yulin Jin, et al.
Izdano: (2025-02-01)

The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing.
od: Yun Huang, et al.
Izdano: (2010-01-01)

Bisulfite-free epigenomics and genomics of single cells through methylation-sensitive restriction
od: Christoph Niemöller, et al.
Izdano: (2021-02-01)

BS-Seeker3: ultrafast pipeline for bisulfite sequencing
od: Kevin Yu Yuan Huang, et al.
Izdano: (2018-04-01)

Comparative analysis of 12 different kits for bisulfite conversion of circulating cell-free DNA
od: Mai-Britt Worm Ørntoft, et al.
Izdano: (2017-08-01)

WBSA: web service for bisulfite sequencing data analysis.
od: Fang Liang, et al.
Izdano: (2014-01-01)

Mutagenic and cytotoxic properties of oxidation products of 5-methylcytosine revealed by next-generation sequencing.
od: Xi-Wen Xing, et al.
Izdano: (2013-01-01)

High resolution profiling of human exon methylation by liquid hybridization capture-based bisulfite sequencing
od: Wang Junwen, et al.
Izdano: (2011-12-01)

Identification of cell type-specific methylation signals in bulk whole genome bisulfite sequencing data
od: C. Anthony Scott, et al.
Izdano: (2020-07-01)

A Modified Protocol for Bisulfite Genomic Sequencing of Difficult Samples
od: Pappas Jane J, et al.
Izdano: (2009-06-01)

Optimized reduced representation bisulfite sequencing reveals tissue-specific mCHH islands in maize
od: Fei-Man Hsu, et al.
Izdano: (2017-08-01)

Erasure of Tet-Oxidized 5-Methylcytosine by a SRAP Nuclease
od: Soo-Mi Kweon, et al.
Izdano: (2017-10-01)

BSMAP: whole genome bisulfite sequence MAPping program
od: Li Wei, et al.
Izdano: (2009-07-01)

VAliBS: a visual aligner for bisulfite sequences
od: Min Li, et al.
Izdano: (2017-10-01)

Library Construction for Genome-wide Bisulfite Sequencing in Plants
od: David Amador, et al.
Izdano: (2013-12-01)

Isoform-specific and ubiquitination dependent recruitment of Tet1 to replicating heterochromatin modulates methylcytosine oxidation
od: María Arroyo, et al.
Izdano: (2022-09-01)

Whole-genome bisulfite sequencing identifies stage- and subtype-specific DNA methylation signatures in pancreatic cancer
od: Sarah S. Wang, et al.
Izdano: (2024-04-01)

Genome-wide Bisulfite Sequencing in Zygotes Identifies Demethylation Targets and Maps the Contribution of TET3 Oxidation
od: Julian R. Peat, et al.
Izdano: (2014-12-01)

Transformer‐based representation learning and multiple‐instance learning for cancer diagnosis exclusively from raw sequencing fragments of bisulfite‐treated plasma cell‐free DNA
od: Jilei Liu, et al.
Izdano: (2024-11-01)

Evaluation of commercial kits for isolation and bisulfite conversion of circulating cell-free tumor DNA from blood
od: Stine H. Kresse, et al.
Izdano: (2023-09-01)

A validation of Illumina EPIC array system with bisulfite-based amplicon sequencing
od: Alexandra J. Noble, et al.
Izdano: (2021-02-01)

DNA methylome profiling at single-base resolution through bisulfite sequencing of 5mC-immunoprecipitated DNA
od: Zhen Jia, et al.
Izdano: (2018-02-01)

Information recovery from low coverage whole-genome bisulfite sequencing
od: Emanuele Libertini, et al.
Izdano: (2016-06-01)

How to Design a Whole-Genome Bisulfite Sequencing Experiment
od: Claudius Grehl, et al.
Izdano: (2018-12-01)