A simple and fast two-locus quality control test to detect false positives due to batch effects in genome-wide association studies.

A simple and fast two-locus quality control test to detect false positives due to batch effects in genome-wide association studies.

The impact of erroneous genotypes having passed standard quality control (QC) can be severe in genome-wide association studies, genotype imputation, and estimation of heritability and prediction of genetic risk based on single nucleotide polymorphisms (SNP). To detect such genotyping errors, a simpl...

Descripció completa

Dades bibliogràfiques
Autors principals:	Lee, S, Nyholt, DR, Macgregor, S, Henders, A, Zondervan, K, Montgomery, G, Visscher, P
Format:	Journal article
Idioma:	English
Publicat:	2010

Ítems similars

Genome-wide association study identifies a locus at 7p15.2 associated with endometriosis
per: Painter, J, et al.
Publicat: (2011)

Genome-Wide Association Study Identifies a Locus at 7p15.2 Associated With Endometriosis
per: Painter, J, et al.
Publicat: (2011)

Genome-wide association study identifies a locus at 7p15.2 associated with endometriosis.
per: Painter, J, et al.
Publicat: (2011)

Genome-wide Association Study of Endometriosis Shows Differential Etiology by Stage and Identifies a Locus at 7p15.2 Associated with the Development of Moderate-severe Disease
per: Zondervan, K, et al.
Publicat: (2010)

Genome-Wide Association Study of Endometriosis Shows Differential Etiology by Stage and Identifies a Locus at 7p15.2 Associated with the Development of Moderate-Severe Disease
per: Zondervan, K, et al.
Publicat: (2011)

Beyond endometriosis genome-wide association study: from genomics to phenomics to the patient
per: Zondervan, K, et al.
Publicat: (2016)

Association between endometriosis and the interleukin 1A (IL1A) locus.
per: Sapkota, Y, et al.
Publicat: (2015)

Genetic variants underlying risk of endometriosis: insights from meta-analysis of eight genome-wide association and replication datasets.
per: Rahmioglu, N, et al.
Publicat: (2014)

Genome-wide genetic analyses highlight MAPK signalling in the pathogenesis of endometriosis
per: UImari, O, et al.
Publicat: (2017)

Genome-wide association meta-analysis identifies new endometriosis risk loci
per: Nyholt, DR, et al.
Publicat: (2012)

Genome-wide association meta-analysis identifies new endometriosis risk loci.
per: Nyholt, DR, et al.
Publicat: (2012)

Genome-wide enrichment analysis between endometriosis and obesity-related traits reveals novel susceptibility loci.
per: Rahmioglu, N, et al.
Publicat: (2014)

Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis
per: Uimari, O, et al.
Publicat: (2017)

The future for genetic studies in reproduction.
per: Montgomery, G, et al.
Publicat: (2014)

A variational Bayes algorithm for fast and accurate multiple locus genome-wide association analysis
per: Mezey Jason G, et al.
Publicat: (2010-01-01)

Beware of risk for increased false positive rates in genome-wide association studies for phenotypic variability
per: Xia eShen, et al.
Publicat: (2013-05-01)

Mouse genome-wide association mapping needs linkage analysis to avoid false-positive Loci.
per: Giacomo Manenti, et al.
Publicat: (2009-01-01)

A Fast Multi-Locus Ridge Regression Algorithm for High-Dimensional Genome-Wide Association Studies
per: Jin Zhang, et al.
Publicat: (2021-03-01)

Increasing cross-domain call batching using promises and batched control structures
per: Zondervan, Quinton Y
Publicat: (2007)

Increasing Cross-Domain Call Batching Using Promises and Batched Control Structures
per: Zondervan, Quinton Y.
Publicat: (2023)

Misdiagnosis Due to False-Positive Detection of Pneumococcal Urinary Antigen
per: Kaori Notomi, et al.
Publicat: (2022-02-01)

An Extended Application of the Fast Multi-Locus Ridge Regression Algorithm in Genome-Wide Association Studies of Categorical Phenotypes
per: Jin Zhang, et al.
Publicat: (2024-09-01)

False-positive cardiac troponin T due to assay interference with heterophilic antibodies
per: N Shayanfar, et al.
Publicat: (2008-08-01)

False positive metastatic disease due to combined thoracic and subcutaneous splenosis
per: Jeffrey Chen, MBBS, FRANZCR, et al.
Publicat: (2024-03-01)

False Positive Cases in Automated Blood Culture Systems Due to Hyperleukocytosis
per: Do-Hoon Kim, et al.
Publicat: (2023-06-01)

Fine Mapping Genomic Regions Associated with Endometriosis Risk
per: Montgomery, G, et al.
Publicat: (2014)

Single-Locus and Multi-Locus Genome-Wide Association Studies for Intramuscular Fat in Duroc Pigs
per: Rongrong Ding, et al.
Publicat: (2019-06-01)

The false allure of fast lures
per: Yigal Attali, et al.
Publicat: (2020-01-01)

Genome-wide association studies of polygenic risk score-derived phenotypes may lead to inflated false positive rates
per: Emil Uffelmann, et al.
Publicat: (2023-03-01)

Two-stage two-locus models in genome-wide association.
per: Evans, D, et al.
Publicat: (2006)

Two-stage two-locus models in genome-wide association.
per: Evans, D, et al.
Publicat: (2006)

Two-stage two-locus models in genome-wide association.
per: David M Evans, et al.
Publicat: (2006-09-01)

Fast 2D filter with low false positive for network packet inspection
per: Roaa Shubbar, et al.
Publicat: (2017-11-01)

Genome-wide imputed differential expression enrichment analysis identifies trait-relevant tissues
per: Ammarah Ghaffar, et al.
Publicat: (2023-01-01)

Estimation and partitioning of polygenic variation captured by common SNPs for Alzheimer's disease, multiple sclerosis and endometriosis.
per: Lee, S, et al.
Publicat: (2013)

High-density fine-mapping of a chromosome 10q26 linkage peak suggests association between endometriosis and variants close to CYP2C19
per: Painter, J, et al.
Publicat: (2011)

Reply to: Genome-wide association studies of polygenic risk score-derived phenotypes may lead to inflated false positive rates
per: Rita Guerreiro, et al.
Publicat: (2023-03-01)

An evaluation of the genome-wide false positive rates of common methods for identifying differentially methylated regions using illumina methylation arrays
per: Yuanchao Zheng, et al.
Publicat: (2022-12-01)

Batch effect correction for genome-wide methylation data with Illumina Infinium platform
per: Sun Zhifu, et al.
Publicat: (2011-12-01)

False Positive Hemianopia
per: Ravid Ben-Avi, et al.
Publicat: (2022-05-01)