Increased chloroplast occupancy in bundle sheath cells of rice hap3H mutants revealed by Chloro-Count: a new deep learning–based tool

<ul> <li>There is an increasing demand to boost photosynthesis in rice to increase yield potential. Chloroplasts are the site of photosynthesis, and increasing their number and size is a potential route to elevate photosynthetic activity. Notably, bundle sheath cells do not make a signif...

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书目详细资料
Main Authors: Lambret Frotte, J, Buarque de Gusmão, PP, Smith, G, Lo, S-F, Yu, S-M, Hendron, RW, Kelly, S, Langdale, JA
格式: Journal article
语言:English
出版: Wiley 2024
实物特征
总结:<ul> <li>There is an increasing demand to boost photosynthesis in rice to increase yield potential. Chloroplasts are the site of photosynthesis, and increasing their number and size is a potential route to elevate photosynthetic activity. Notably, bundle sheath cells do not make a significant contribution to overall carbon fixation in rice, and thus, various attempts are being made to increase chloroplast content specifically in this cell type.</li> <li>In this study, we developed and applied a deep learning tool, Chloro-Count, and used it to quantify chloroplast dimensions in bundle sheath cells of&nbsp;<em>OsHAP3H</em>&nbsp;gain- and loss-of-function mutants in rice.</li> <li>Loss of&nbsp;<em>OsHAP3H</em>&nbsp;increased chloroplast occupancy in bundle sheath cells by 50%. When grown in the field, mutants exhibited increased numbers of tillers and panicles. The implementation of Chloro-Count enabled precise quantification of chloroplasts in loss- and gain-of-function&nbsp;<em>OsHAP3H</em>&nbsp;mutants and facilitated a comparison between 2D and 3D quantification methods.</li> <li>Collectively, our observations revealed that a mechanism operates in bundle sheath cells to restrict chloroplast occupancy as cell dimensions increase. That mechanism is unperturbed in&nbsp;<em>Oshap3H</em>&nbsp;mutants but loss of&nbsp;<em>OsHAP3H</em>&nbsp;function leads to an increase in chloroplast numbers. The use of Chloro-Count also revealed that 2D quantification is compromised by the positioning of chloroplasts within the cell.</li> </ul>