TETyper: a bioinformatic pipeline for classifying variation and genetic contexts of transposable elements from short-read whole-genome sequencing data

Much of the worldwide dissemination of antibiotic resistance has been driven by resistance gene associations with mobile genetic elements (MGEs), such as plasmids and transposons. Although increasing, our understanding of resistance spread remains relatively limited, as methods for tracking mobile r...

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Bibliographic Details
Main Authors: Sheppard, A, Stoesser, N, German-Mesner, I, Vegesana, K, Walker, A, Crook, D, Mathers, A
Format: Journal article
Published: Microbiology Society 2018