Simulation data for rolling circle amplification shows a sinusoidal template length-dependent amplification bias

Simulation data for rolling circle amplification shows a sinusoidal template length-dependent amplification bias

Data was created using oxDNA2 on CentOS Linux (available at https://dna.physics.ox.ac.uk/index.php/Main_Page and https://sourceforge.net/projects/oxdna/ ; it functions on other UNIX-based operating systems including MacOSX as well), and manipulated primarily using awk, bash and python. All data is i...

Disgrifiad llawn

Manylion Llyfryddiaeth
Prif Awdur:	Presern, D
Fformat:	Dataset
Cyhoeddwyd:	University of Oxford 2017

Eitemau Tebyg

Rolling circle amplification shows a sinusoidal template length-dependent amplification bias.
gan: Joffroy, B, et al.
Cyhoeddwyd: (2017)

RNase H-dependent amplification improves the accuracy of rolling circle amplification combined with loop-mediated isothermal amplification (RCA-LAMP)
gan: Takema Hasegawa, et al.
Cyhoeddwyd: (2021-07-01)

TempliPhi, ⌽29 DNA Polymerase Based Rolling Circle Amplification of Templates for DNA Sequencing
gan: John R. Nelson, et al.
Cyhoeddwyd: (2002-06-01)

Controlled Microwave Heating Accelerates Rolling Circle Amplification.
gan: Takeo Yoshimura, et al.
Cyhoeddwyd: (2015-01-01)

Dual-Signal Amplification Strategy for Sensitive MicroRNA Detection Based on Rolling Circle Amplification and Enzymatic Repairing Amplification
gan: Fubing Xiao, et al.
Cyhoeddwyd: (2020-12-01)

Coupled rolling circle amplification loop-mediated amplification for rapid detection of short DNA sequences
gan: Jennifer Y. Marciniak, et al.
Cyhoeddwyd: (2008-09-01)

Real-Time QCM Measurements of Rolling Circle Amplification Products
gan: Narayanan Madaboosi, et al.
Cyhoeddwyd: (2017-08-01)

Detection of rotavirus using padlock probes and rolling circle amplification.
gan: Anja Mezger, et al.
Cyhoeddwyd: (2014-01-01)

Primer extension mutagenesis powered by selective rolling circle amplification.
gan: Tuomas Huovinen, et al.
Cyhoeddwyd: (2012-01-01)

High-throughput genotyping of single nucleotide polymorphisms with rolling circle amplification
gan: Sun Zhenyu, et al.
Cyhoeddwyd: (2001-08-01)

Expanding the chemical functionality of DNA nanomaterials generated by rolling circle amplification
gan: Baker, YR, et al.
Cyhoeddwyd: (2021)

Research Progress on Rolling Circle Amplification (RCA)-Based Biomedical Sensing
gan: Lide Gu, et al.
Cyhoeddwyd: (2018-04-01)

Optimized Whole-Genome Amplification Strategy for Extremely AT-Biased Template.
gan: Oyola, S, et al.
Cyhoeddwyd: (2014)

An on-nanoparticle rolling-circle amplification platform for ultrasensitive protein detection in biological fluids
gan: Yan, Juan, et al.
Cyhoeddwyd: (2012)

Production of single-stranded DNAs by self-cleavage of rolling-circle amplification products
gan: Hongzhou Gu, et al.
Cyhoeddwyd: (2013-06-01)

Rapid identification of emerging human-pathogenic Sporothrix species with rolling circle amplification
gan: Anderson Messias Rodrigues, et al.
Cyhoeddwyd: (2015-12-01)

Detection of HIV cDNA Point Mutations with Rolling-Circle Amplification Arrays
gan: Zhongwei Wu, et al.
Cyhoeddwyd: (2010-01-01)

Ultrasensitive colorimetric DNA detection using a combination of rolling circle amplification and Nicking Endonuclease-Assisted Nanoparticle Amplification (NEANA)
gan: Xu, Wei, et al.
Cyhoeddwyd: (2013)

MiRNA Detection Using a Rolling Circle Amplification and RNA-Cutting Allosteric Deoxyribozyme Dual Signal Amplification Strategy
gan: Chenxin Fang, et al.
Cyhoeddwyd: (2021-07-01)

Rolling circle amplification-RACE: a method for simultaneous isolation of 5′ and 3′ cDNA ends from amplified cDNA templates
gan: Alexios N. Polidoros, et al.
Cyhoeddwyd: (2006-07-01)

Cell-free protein synthesis using multiply-primed rolling circle amplification products
gan: Gyanendra Kumar, et al.
Cyhoeddwyd: (2009-07-01)

Exploring the Trans-Cleavage Activity with Rolling Circle Amplification for Fast Detection of miRNA
gan: Chenqi Niu, et al.
Cyhoeddwyd: (2023-01-01)

Programmable all-DNA hydrogels based on rolling circle and multiprimed chain amplification products
gan: Wildan Hanif, et al.
Cyhoeddwyd: (2023-12-01)

Environmental Screening of <i>Fonsecaea</i> Agents of Chromoblastomycosis Using Rolling Circle Amplification
gan: Morgana Ferreira Voidaleski, et al.
Cyhoeddwyd: (2020-11-01)

Rolling Circle Amplification as an Efficient Analytical Tool for Rapid Detection of Contaminants in Aqueous Environments
gan: Kuankuan Zhang, et al.
Cyhoeddwyd: (2021-09-01)

Rolling Circle and Loop Mediated Isothermal Amplification Strategy for Ultrasensitive miRNA Detection
gan: Zheng Cao, et al.
Cyhoeddwyd: (2021-10-01)

Barcoding of Plant Viruses with Circular Single-Stranded DNA Based on Rolling Circle Amplification
gan: Holger Jeske
Cyhoeddwyd: (2018-08-01)

DNA aptamer-based rolling circle amplification product as a novel immunological adjuvant
gan: Adil S. Al-Ogaili, et al.
Cyhoeddwyd: (2020-12-01)

Amplification and Quantitation of Telomeric Extrachromosomal Circles
gan: Nathaniel Robinson, et al.
Cyhoeddwyd: (2023-03-01)

Deep sequencing of hepatitis B virus (HBV) genomes using rolling circle amplification and Nanopore
gan: Mcnaughton, A, et al.
Cyhoeddwyd: (2018)

Ultrasensitive Multiplexed MicroRNA Quantification on Encoded Gel Microparticles Using Rolling Circle Amplification
gan: Chapin, Stephen C., et al.
Cyhoeddwyd: (2013)

Visual detection of Staphylococcus aureus based on magnetic bead target enrichment and rolling circle amplification
gan: Bingying Li, et al.
Cyhoeddwyd: (2025-01-01)

Portable Aptasensor Based on Parallel Rolling Circle Amplification for Tumor‐Derived Exosomes Liquid Biopsy
gan: Yaqin He, et al.
Cyhoeddwyd: (2024-08-01)

Cell-free cloning using multiply-primed rolling circle amplification with modified RNA primers
gan: Hirokazu Takahashi, et al.
Cyhoeddwyd: (2009-07-01)

Detection of nucleic acids with a novel stem-loop primer rolling circle amplification technique
gan: Beibei Zhang, et al.
Cyhoeddwyd: (2018-02-01)

Advances in Rolling Circle Amplification (RCA)‐Based DNA‐Functional Materials for Cancer Diagnosis and Therapy
gan: Xun You, et al.
Cyhoeddwyd: (2024-03-01)

Electrochemical Genosensing of <i>E. coli</i> Based on Padlock Probes and Rolling Circle Amplification
gan: Alejandra Ben Aissa, et al.
Cyhoeddwyd: (2021-03-01)

DNAzyme-Based Target-Triggered Rolling-Circle Amplification for High Sensitivity Detection of microRNAs
gan: Chen Liu, et al.
Cyhoeddwyd: (2020-04-01)

Rolling-Circle-Amplification-Assisted DNA Biosensors for Sensitive and Specific Detection of Hypochlorous Acid and Myeloperoxidase
gan: Bo Liu, et al.
Cyhoeddwyd: (2023-06-01)

Identification of the major molecular types of Cryptococcus neoformans and C. gattii by Hyperbranched rolling circle amplification.
gan: Luciana Trilles, et al.
Cyhoeddwyd: (2014-01-01)