Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver

Studying the evolution of viruses and their molecular epidemiology relies on accurate viral sequence data, so that small differences between similar viruses can be meaningfully interpreted. Despite its higher throughput and more detailed minority variant data, next-generation sequencing has yet to b...

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Bibliographic Details
Main Authors:	Wymant, C, Blanquart, F, Golubchik, T, Gall, A, Bakker, M, Bezemer, D, Croucher, N, Hall, M, Hillebregt, M, Ong, S, Ratmann, O, Albert, J, Bannert, N, Fellay, J, Fransen, K, Gourlay, A, Grabowski, M, Gunsenheimer-Bartmeyer, B, Günthard, H, Kivelä, P, Kouyos, R, Laeyendecker, O, Liitsola, K, Meyer, L, Porter, K, Ristola, M, van Sighem, A, Berkhout, B, Cornelissen, M, Kellam, P, Reiss, P, Fraser, C
Format:	Journal article
Language:	English
Published:	Oxford University Press 2018

Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver

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