Multiscale reaction-diffusion simulations with Smoldyn

Multiscale reaction-diffusion simulations with Smoldyn

<p style="text-align:justify;"> <b>Summary:</b> Smoldyn is a software package for stochastic modelling of spatial biochemical networks and intracellular systems. It was originally developed with an accurate off-lattice particle-based model at its core. This has recently...

पूर्ण विवरण

ग्रंथसूची विवरण
मुख्य लेखकों:	Robinson, M, Andrews, S, Erban, R
स्वरूप:	Journal article
भाषा:	English
प्रकाशित:	Oxford University Press 2015

समान संसाधन

Detailed simulations of cell biology with Smoldyn 2.1.
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प्रकाशित: (2012)

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Multiscale stochastic reaction–diffusion algorithms combining Markov chain models with stochastic partial differential equations
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प्रकाशित: (2019)

Reactive boundary conditions for stochastic simulations of reaction-diffusion processes.
द्वारा: Erban, R, और अन्य
प्रकाशित: (2007)

Reactive boundary conditions for stochastic simulations of reaction-diffusion processes
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द्वारा: Flegg, M, और अन्य
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द्वारा: Flegg, M, और अन्य
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द्वारा: Erban, R, और अन्य
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Multiscale reaction-diffusiion algorithms: PDE-assisted Brownian dynamics
द्वारा: Franz, B, और अन्य
प्रकाशित: (2013)

Stochastic modelling of reaction-diffusion processes: algorithms for bimolecular reactions.
द्वारा: Erban, R, और अन्य
प्रकाशित: (2009)

Stochastic modelling of reaction-diffusion processes: algorithms for bimolecular reactions
द्वारा: Erban, R, और अन्य
प्रकाशित: (2009)

Reaction time for trimolecular reactions in compartment-based reaction-diffusion models
द्वारा: Li, F, और अन्य
प्रकाशित: (2018)

A constrained approach to multiscale stochastic simulation of chemically reacting systems.
द्वारा: Cotter, S, और अन्य
प्रकाशित: (2011)

A constrained approach to multiscale stochastic simulation of chemically reacting systems
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A Constrained Approach to Multiscale Stochastic Simulation of Chemically Reacting Systems
द्वारा: Cotter, S, और अन्य
प्रकाशित: (2011)

Multi-grid reaction-diffusion master equation: applications to morphogen gradient modelling
द्वारा: Erban, R, और अन्य
प्रकाशित: (2024)

Multi-Grid Reaction-Diffusion Master Equation: Applications to Morphogen Gradient Modelling
द्वारा: Erban, R, और अन्य
प्रकाशित: (2024)

Particle-based multiscale modeling of intracellular calcium dynamics
द्वारा: Dobramysl, U, और अन्य
प्रकाशित: (2015)

Particle-based multiscale modeling of calcium puff dynamics
द्वारा: Dobramysl, U, और अन्य
प्रकाशित: (2016)

Error Estimates for the Heterogeneous Multiscale Finite Volume Method of Convection-Diffusion-Reaction Problem
द्वारा: Tao Yu, और अन्य
प्रकाशित: (2018-01-01)

Analysis of Brownian Dynamics Simulations of Reversible Bimolecular Reactions
द्वारा: Lipkova, J, और अन्य
प्रकाशित: (2010)

Analysis of Brownian dynamics simulations of reversible biomolecular reactions
द्वारा: Lipkova, J, और अन्य
प्रकाशित: (2010)

Reaction-Diffusion in the NEURON Simulator
द्वारा: Robert A. McDougal, और अन्य
प्रकाशित: (2013-11-01)

From signal transduction to spatial pattern formation in E-coli: A paradigm for multiscale modeling in biology
द्वारा: Erban, R, और अन्य
प्रकाशित: (2005)

Multiscale Lattice Boltzmann Simulation of the Kinetics Process of Methane Desorption-Diffusion in Coal
द्वारा: Zhigao Peng, और अन्य
प्रकाशित: (2021-07-01)

Brunner syndrome caused by point mutation explained by multiscale simulation of enzyme reaction
द्वारा: Alja Prah, और अन्य
प्रकाशित: (2022-12-01)

Reaction-diffusion modeling in the NEURON simulator
द्वारा: McDougal Robert A, और अन्य
प्रकाशित: (2012-07-01)

A higher-order numerical framework for stochastic simulation of chemical reaction systems.
द्वारा: Székely, T, और अन्य
प्रकाशित: (2012)

A higher-order numerical framework for stochastic simulation of chemical reaction systems
द्वारा: Szekely, T, और अन्य
प्रकाशित: (2012)

An Interplay Between Reaction-Diffusion and Cell-Matrix Adhesion Regulates Multiscale Invasion in Early Breast Carcinomatosis
द्वारा: Dharma Pally, और अन्य
प्रकाशित: (2019-08-01)

Varying the resolution of the Rouse model on temporal and spatial scales: application to multiscale modelling of DNA dynamics
द्वारा: Rolls, E, और अन्य
प्रकाशित: (2017)

Higher-order numerical methods for stochastic simulation of chemical reaction systems
द्वारा: Székely Jr., T, और अन्य
प्रकाशित: (2011)

Gene regulatory networks: a coarse-grained, equation-free approach to multiscale computation.
द्वारा: Erban, R, और अन्य
प्रकाशित: (2006)

Gene regulatory networks: A coarse-grained, equation-free approach to multiscale computation
द्वारा: Erban, R, और अन्य
प्रकाशित: (2006)

Fat versus Thin Threading Approach on GPUs: Application to Stochastic Simulation of Chemical Reactions.
द्वारा: Klingbeil, G, और अन्य
प्रकाशित: (2012)

Fat versus thin threading approach on GPUs: application to stochastic simulation of chemical reactions
द्वारा: Klingbeil, G, और अन्य
प्रकाशित: (2012)

Fat vs. thin threading approach on GPUs: application to stochastic simulation of chemical reactions
द्वारा: Klingbeil, G, और अन्य
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Multiscale Simulations in Welds
द्वारा: Edison A. Bonifaz
प्रकाशित: (2012-12-01)