DNA triplex formation with 5-dimethylaminopropargyl deoxyuridine.

DNA triplex formation with 5-dimethylaminopropargyl deoxyuridine.

We have prepared triplex-forming oligonucleotides containing the nucleotide analogue 5-dimethylaminopropargyl deoxyuridine (DMAPdU) in place of thymidine and examined their ability to form intermolecular triple helices by thermal melting and DNase I footprinting studies. The results were compared wi...

Disgrifiad llawn

Manylion Llyfryddiaeth
Prif Awduron:	Rusling, D, Peng, G, Srinivasan, N, Fox, K, Brown, T
Fformat:	Journal article
Iaith:	English
Cyhoeddwyd:	2009

Eitemau Tebyg

2'-o-dimethylaminoethoxyuridine and 5-dimethylaminopropargyl deoxyuridine for at base pair recognition in triple helices.
gan: Brennan, L, et al.
Cyhoeddwyd: (2007)

5-(1-propargylamino)-2'-deoxyuridine (UP): a novel thymidine analogue for generating DNA triplexes with increased stability.
gan: Bijapur, J, et al.
Cyhoeddwyd: (1999)

Formation of stable DNA triplexes.
gan: Fox, K, et al.
Cyhoeddwyd: (2011)

The stability of triplex DNA is affected by the stability of the underlying duplex.
gan: Rusling, D, et al.
Cyhoeddwyd: (2009)

Triplex-directed covalent cross-linking of a DNA nanostructure.
gan: Rusling, D, et al.
Cyhoeddwyd: (2012)

Triplex-directed recognition of a DNA nanostructure assembled by crossover strand exchange.
gan: Rusling, D, et al.
Cyhoeddwyd: (2012)

Kinetic studies on the formation of DNA triplexes containing the nucleoside analogue 2'-O-(2-aminoethyl)-5-(3-amino-1-propynyl)uridine.
gan: Rusling, D, et al.
Cyhoeddwyd: (2008)

Stabilisation of self-assembled DNA crystals by triplex-directed photo-cross-linking
gan: Abdallah, H, et al.
Cyhoeddwyd: (2016)

Selectivity and affinity of triplex-forming oligonucleotides containing 2'-aminoethoxy-5-(3-aminoprop-1-ynyl)uridine for recognizing AT base pairs in duplex DNA.
gan: Osborne, S, et al.
Cyhoeddwyd: (2004)

Towards the targeted modulation of gene expression by modified triplex-forming oligonucleotides
gan: Rusling, D, et al.
Cyhoeddwyd: (2008)

DNA sequence specificity of triplex-binding ligands.
gan: Keppler, MD, et al.
Cyhoeddwyd: (2003)

Triplex staples: DNA double-strand cross-linking at internal and terminal sites using psoralen-containing triplex-forming oligonucleotides.
gan: Li, H, et al.
Cyhoeddwyd: (2006)

Monitoring DNA replication in fission yeast by incorporation of 5-ethynyl-2'-deoxyuridine
gan: Hua, H, et al.
Cyhoeddwyd: (2011)

Monitoring DNA replication in fission yeast by incorporation of 5-ethynyl-2'-deoxyuridine.
gan: Hua, H, et al.
Cyhoeddwyd: (2011)

Four base recognition by triplex-forming oligonucleotides at physiological pH.
gan: Rusling, D, et al.
Cyhoeddwyd: (2005)

Synthesis of anthraquinone oligonucleotides for triplex stabilization.
gan: Zhao, Z, et al.
Cyhoeddwyd: (2007)

Enzymatic incorporation and fluorescent labelling of cyclooctyne-modified deoxyuridine triphosphates in DNA.
gan: Ren, X, et al.
Cyhoeddwyd: (2014)

Stable recognition of TA interruptions by triplex forming oligonucleotides containing a novel nucleoside.
gan: Wang, Y, et al.
Cyhoeddwyd: (2005)

DNA triple-helix formation at target sites containing duplex mismatches.
gan: Rusling, D, et al.
Cyhoeddwyd: (2006)

Potent triple helix stabilization by 5',3'-modified triplex-forming oligonucleotides.
gan: Ben Gaied, N, et al.
Cyhoeddwyd: (2009)

DNA triple helix stabilisation by covalent attachment of a triplex-specific ligand.
gan: Keppler, MD, et al.
Cyhoeddwyd: (1999)

Synthesis of a novel bis-amino-modified thymidine monomer for use in DNA triplex stabilisation
gan: Sollogoub, M, et al.
Cyhoeddwyd: (2000)

Triplex addressability as a basis for functional DNA nanostructures.
gan: Tumpane, J, et al.
Cyhoeddwyd: (2007)

DNA structural changes induced by intermolecular triple helix formation
gan: Sayoh, I, et al.
Cyhoeddwyd: (2020)

Solution conformation of a parallel DNA triple helix with 5' and 3' triplex-duplex junctions.
gan: Asensio, J, et al.
Cyhoeddwyd: (1999)

Simultaneous visualization of FISH signals and bromo-deoxyuridine incorporation by formamide-free DNA denaturation.
gan: Moralli, D, et al.
Cyhoeddwyd: (2010)

Combining nucleoside analogues to achieve recognition of oligopurine tracts by triplex-forming oligonucleotides at physiological pH.
gan: Rusling, D, et al.
Cyhoeddwyd: (2005)

2 '-Substituted 2-amino-3-methylpyridine ribonucleosides in triplex-forming oligonucleotides: triplex stability is determined by chemical environment
gan: Lou, C, et al.
Cyhoeddwyd: (2011)

Secondary binding sites for heavily modified triplex forming oligonucleotides.
gan: Cardew, A, et al.
Cyhoeddwyd: (2012)

Crystallization and preliminary crystallographic analysis of deoxyuridine 5'-triphosphate nucleotidohydrolase from Bacillus subtilis.
gan: Persson, R, et al.
Cyhoeddwyd: (2001)

Oxidative DNA cleavage with clip‐phenanthroline triplex‐forming oligonucleotide hybrids
gan: Panattoni, A, et al.
Cyhoeddwyd: (2019)

Solution conformation of an intramolecular DNA triplex containing a nonnucleotide linker: comparison with the DNA duplex.
gan: Bartley, J, et al.
Cyhoeddwyd: (1997)

Deep learning based DNA:RNA triplex forming potential prediction
gan: Zhang, Yu, et al.
Cyhoeddwyd: (2021)

Probing the effects of non-base-triple-forming nucleotides on triplex formation
gan: Liu, Yiran
Cyhoeddwyd: (2017)

Fluorogenic thiazole orange TOTFO probes stabilise parallel DNA triplexes at pH 7 and above
gan: Walsh, S, et al.
Cyhoeddwyd: (2018)

Modeling pK shift in DNA triplexes containing locked nucleic acids
gan: Hartono, Yossa Dwi, et al.
Cyhoeddwyd: (2019)

Synthesis and properties of triplex-forming oligonucleotides containing 2'-O-(2-methoxyethyl)-5-(3-aminoprop-1-ynyl)-uridine.
gan: Lou, C, et al.
Cyhoeddwyd: (2010)

Simultaneous detection of FISH signals and bromo-deoxyuridine incorporation in fixed tissue cultured cells.
gan: Moralli, D, et al.
Cyhoeddwyd: (2009)

Improved synthesis of 5-hydroxymethyl-2'-deoxycytidine phosphoramidite using a 2'-deoxyuridine to 2'-deoxycytidine conversion without temporary protecting groups.
gan: Hansen, A, et al.
Cyhoeddwyd: (2011)

Stability of the different arms of a DNA tetrahedron and its interaction with a minor groove ligand
gan: Carter, M, et al.
Cyhoeddwyd: (2019)