Population genetic analysis of Plasmodium falciparum parasites using a customized Illumina GoldenGate genotyping assay.

Population genetic analysis of Plasmodium falciparum parasites using a customized Illumina GoldenGate genotyping assay.

The diversity in the Plasmodium falciparum genome can be used to explore parasite population dynamics, with practical applications to malaria control. The ability to identify the geographic origin and trace the migratory patterns of parasites with clinically important phenotypes such as drug resista...

Podrobná bibliografie
Hlavní autoři:	Campino, S, Auburn, S, Kivinen, K, Zongo, I, Ouedraogo, J, Mangano, V, Djimde, A, Doumbo, O, Kiara, S, Nzila, A, Borrmann, S, Marsh, K, Michon, P, Mueller, I, Siba, P, Jiang, H, Su, X, Amaratunga, C, Socheat, D, Fairhurst, R, Imwong, M, Anderson, T, Nosten, F, White, N, Gwilliam, R, Deloukas, P, MacInnis, B, Newbold, C, Rockett, K, Clark, T, Kwiatkowski, D
Médium:	Journal article
Jazyk:	English
Vydáno:	Public Library of Science 2011

Podobné jednotky

Population genetic analysis of Plasmodium falciparum parasites using a customized Illumina GoldenGate genotyping assay.
Autor: Susana Campino, a další
Vydáno: (2011-01-01)

Data analysis issues for allele-specific expression using Illumina's GoldenGate assay
Autor: Dermitzakis Emmanouil T, a další
Vydáno: (2010-05-01)

Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing.
Autor: Manske, M, a další
Vydáno: (2012)

Characterization of within-host Plasmodium falciparum diversity using next-generation sequence data.
Autor: Auburn, S, a další
Vydáno: (2012)

Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing
Autor: Manske, M, a další
Vydáno: (2012)

Design and implementation on remote disaster recovery system based on Goldengate
Autor: Zhengyu MI
Vydáno: (2018-04-01)

Design and implementation on remote disaster recovery system based on Goldengate
Autor: Zhengyu MI
Vydáno: (2018-04-01)

Characterization of within-host Plasmodium falciparum diversity using next-generation sequence data.
Autor: Sarah Auburn, a další
Vydáno: (2012-01-01)

Whole-genome scans provide evidence of adaptive evolution in Malawian Plasmodium falciparum isolates.
Autor: Ocholla, H, a další
Vydáno: (2014)

Using CF11 cellulose columns to inexpensively and effectively remove human DNA from Plasmodium falciparum-infected whole blood samples.
Autor: Venkatesan, M, a další
Vydáno: (2012)

PlasmoView: a web-based resource to visualise global Plasmodium falciparum genomic variation.
Autor: Preston, MD, a další
Vydáno: (2014)

An effective method to purify Plasmodium falciparum DNA directly from clinical blood samples for whole genome high-throughput sequencing
Autor: Auburn, S, a další
Vydáno: (2011)

Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes
Autor: Oyola Samuel O, a další
Vydáno: (2012-01-01)

A genotype calling algorithm for the Illumina BeadArray platform.
Autor: Teo, Y, a další
Vydáno: (2007)

A genotype calling algorithm for the Illumina BeadArray platform.
Autor: Teo, Y, a další
Vydáno: (2007)

Using CF11 cellulose columns to inexpensively and effectively remove human DNA from <it>Plasmodium falciparum</it>-infected whole blood samples
Autor: Venkatesan Meera, a další
Vydáno: (2012-02-01)

Optimizing Illumina next-generation sequencing library preparation for extremely AT-biased genomes.
Autor: Oyola, S, a další
Vydáno: (2012)

Drug-resistant genotypes and multi-clonality in Plasmodium falciparum analysed by direct genome sequencing from peripheral blood of malaria patients
Autor: Robinson, T, a další
Vydáno: (2011)

Drug-resistant genotypes and multi-clonality in Plasmodium falciparum analysed by direct genome sequencing from peripheral blood of malaria patients
Autor: Robinson, T, a další
Vydáno: (2011)

A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strains
Autor: Preston, MD, a další
Vydáno: (2014)

A Bayesian approach using covariance of single nucleotide polymorphism data to detect differences in linkage disequilibrium patterns between groups of individuals.
Autor: Clark, T, a další
Vydáno: (2010)

A Bayesian approach using covariance of single nucleotide polymorphism data to detect differences in linkage disequilibrium patterns between groups of individuals.
Autor: Clark, T, a další
Vydáno: (2010)

PANDAseq: paired-end assembler for illumina sequences
Autor: Masella Andre P, a další
Vydáno: (2012-02-01)

In vitro activities of piperaquine, lumefantrine, and dihydroartemisinin in Kenyan Plasmodium falciparum isolates and polymorphisms in pfcrt and pfmdr1.
Autor: Mwai, L, a další
Vydáno: (2009)

Transcriptome sequencing of sesame (Sesamum indicum) using Illumina Platform
Autor: P SUPRIYA, a další
Vydáno: (2023-03-01)

Chloroquine resistance before and after its withdrawal in Kenya.
Autor: Mwai, L, a další
Vydáno: (2009)

Genome-wide and fine-resolution association analysis of malaria in West Africa.
Autor: Jallow, M, a další
Vydáno: (2009)

SnoopCGH: software for visualizing comparative genomic hybridization data.
Autor: Almagro-Garcia, J, a další
Vydáno: (2009)

argyle: An R Package for Analysis of Illumina Genotyping Arrays
Autor: Andrew P. Morgan
Vydáno: (2016-02-01)

Repeatability of methylation measures using a QIAseq targeted methyl panel and comparison with the Illumina HumanMethylation450 assay
Autor: Chenglong Yu, a další
Vydáno: (2021-10-01)

Metagenomic data of fungal community in Kongsfjorden, Arctic using Illumina next generation sequencing
Autor: Farha Arakkaveettil Kabeer, a další
Vydáno: (2019-02-01)

Genome-wide screen identifies new candidate genes associated with artemisinin susceptibility in Plasmodium falciparum in Kenya
Autor: Borrmann, S, a další
Vydáno: (2013)

Rapid recovery of complete mitogenome of Indian major carp, Catla catla from low depth paired end Illumina sequencing
Autor: L. Sahoo, a další
Vydáno: (2017-01-01)

Illumina reads correction: evaluation and improvements
Autor: Maciej Długosz, a další
Vydáno: (2024-01-01)

Statistical issues in the analysis of Illumina data
Autor: Tavaré Simon, a další
Vydáno: (2008-02-01)

Viral Metagenomics: Analysis of Begomoviruses by Illumina High-Throughput Sequencing
Autor: Ali Idris, a další
Vydáno: (2014-03-01)

Validating discovered Cis-acting regulatory genetic variants: application of an allele specific expression approach to HapMap populations
Autor: Campino, S, a další
Vydáno: (2008)

Introduction to Special Issue “Language Translation in Localizing Religious Musical Practice”
Autor: John MacInnis
Vydáno: (2022-08-01)

Augustine’s De Musica in the 21st Century Music Classroom
Autor: John MacInnis
Vydáno: (2015-03-01)

Perspectives of using Illumina MiSeq for identification of arbuscular mycorrhizal fungi
Autor: A. A. Kryukov, a další
Vydáno: (2020-04-01)