Advanced methods and algorithms for biological networks analysis

Advanced methods and algorithms for biological networks analysis

Modeling and analysis of complex biological networks presents a number of mathematical challenges. For the models to be useful from a biological standpoint, they must be systematically compared with data. Robustness is a key to biological understanding and proper feedback to guide experiments, inclu...

書誌詳細
主要な著者:	El-Samad, H, Prajna, S, Papachristodoulou, A, Doyle, J, Khammash, M
フォーマット:	Journal article
言語:	English
出版事項:	2006

類似資料

Model validation and robust stability analysis of the bacterial heat shock response using SOSTOOLS
著者:: El-Samad, H, 等
出版事項: (2003)

Stochastic reachability analysis in complex biological networks
著者:: El-Samad, H, 等
出版事項: (2006)

Challenges at the interface of control engineering and synthetic biology
著者:: Steel, H, 等
出版事項: (2018)

Algorithms for discriminating between biochemical reaction network models: Towards systematic experimental design
著者:: Papachristodoulou, A, 等
出版事項: (2007)

Analysis of switched and hybrid systems - Beyond piecewise quadratic methods
著者:: Prajna, S, 等
出版事項: (2003)

Reverse engineering: the architecture of biological networks
著者:: Mustafa Khammash
出版事項: (2008-03-01)

Robust Stability Analysis of Nonlinear Hybrid Systems.
著者:: Papachristodoulou, A, 等
出版事項: (2009)

Analysis of non-polynomial systems using the sum of squares decomposition
著者:: Papachristodoulou, A, 等
出版事項: (2005)

Tutorial on sum of squares techniques for systems analysis
著者:: Papachristodoulou, A, 等
出版事項: (2005)

Methodological frameworks for large-scale network analysis and design.
著者:: Papachristodoulou, A, 等
出版事項: (2004)

SOS for Nonlinear Delayed Models in Biology and Networking
著者:: Papachristodoulou, A, 等
出版事項: (2009)

Efficient, sparse biological network determination
著者:: August, E, 等
出版事項: (2009)

Advanced methods for gene network identification and noise decomposition from single-cell data
著者:: Zhou Fang, 等
出版事項: (2024-06-01)

On the construction of Lyapunov functions using the sum of squares decomposition
著者:: Papachristodoulou, A, 等
出版事項: (2002)

Nonlinear control synthesis by sum of squares optimization: A Lyapunov-based approach
著者:: Prajna, S, 等
出版事項: (2004)

Discriminating between rival biochemical network models: three approaches to optimal experiment design
著者:: Mélykúti, B, 等
出版事項: (2010)

Model decomposition and reduction tools for large-scale networks in systems biology.
著者:: Anderson, J, 等
出版事項: (2011)

Parameter estimation and model selection in computational biology.
著者:: Gabriele Lillacci, 等
出版事項: (2010-03-01)

On validation and invalidation of biological models
著者:: Anderson, J, 等
出版事項: (2009)

SOSTOOLS and its control applications
著者:: Prajna, S, 等
出版事項: (2005)

SOSTOOLS: Control applications and new developments
著者:: Prajna, S, 等
出版事項: (2004)

Introducing SOSTOOLS: A general purpose sum of squares programming solver
著者:: Prajna, S, 等
出版事項: (2002)

Feedback Control and Synthetic Biology: Constraints on Design
著者:: Steel, H, 等
出版事項: (2017)

Module-based analysis of robustness tradeoffs in the heat shock response system.
著者:: Hiroyuki Kurata, 等
出版事項: (2006-07-01)

Analysis of nonlinear delay differential equation models of TCP/AQM protocols using sums of squares
著者:: Papachristodoulou, A, 等
出版事項: (2004)

Low-burden biological feedback controllers for near-perfect adaptation
著者:: Steel, H, 等
出版事項: (2019)

Design constraints for biological systems that achieve adaptation and disturbance rejection
著者:: Steel, H, 等
出版事項: (2018)

New developments in sum of squares optimization and SOSTOOLS
著者:: Prajna, S, 等
出版事項: (2004)

In situ characterisation and manipulation of biological systems with Chi.Bio - Design Files
著者:: Steel, H, 等
出版事項: (2020)

Algorithmic construction of lyapunov functions for power system stability analysis
著者:: Anghel, M, 等
出版事項: (2013)

Algorithmic Construction of Lyapunov Functions for Power System Stability Analysis.
著者:: Anghel, M, 等
出版事項: (2013)

Stability analysis of power systems using network decomposition and local gain analysis
著者:: Anghel, M, 等
出版事項: (2013)

On validation and invalidation of biological models
著者:: Anderson James, 等
出版事項: (2009-05-01)

A structured model reduction method for large scale networks.
著者:: Chu, B, 等
出版事項: (2011)

Structured sum of squares for networked systems analysis.
著者:: Hancock, E, 等
出版事項: (2011)

A loop shaping approach for designing biological circuits.
著者:: Dolan, J, 等
出版事項: (2012)

Global Stability Analysis of a TCP/AQM protocol for arbitrary networks with delay
著者:: Papachristodoulou, A, 等
出版事項: (2004)

sbml-diff: A tool for visually comparing SBML models in synthetic biology.
著者:: Scott-Brown, J, 等
出版事項: (2016)

Likelihood-free nested sampling for parameter inference of biochemical reaction networks.
著者:: Jan Mikelson, 等
出版事項: (2020-10-01)

A Network Decomposition Approach for Efficient Sum of Squares Programming Based Analysis
著者:: Anderson, J, 等
出版事項: (2010)