Towards the genomic sequence code of DNA fragility for machine learning

Towards the genomic sequence code of DNA fragility for machine learning

Genomic DNA breakages and the subsequent insertion and deletion mutations are important contributors to genome instability and linked diseases. Unlike the research in point mutations, the relationship between DNA sequence context and the propensity for strand breaks remains elusive. Here, by analyzi...

Πλήρης περιγραφή

Λεπτομέρειες βιβλιογραφικής εγγραφής
Κύριοι συγγραφείς:	Pflughaupt, P, Abdullah, A, Masuda, K, Sahakyan, A
Μορφή:	Journal article
Γλώσσα:	English
Έκδοση:	Oxford University Press 2024

Παρόμοια τεκμήρια

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ανά: Pflughaupt, PK
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ανά: Masuda, K, κ.ά.
Έκδοση: (2024)

Quantum mechanical electronic and geometric parameters for DNA k-mers as features for machine learning
ανά: Kairi Masuda, κ.ά.
Έκδοση: (2024-08-01)

Generalised interrelations among mutation rates drive the genomic compliance of Chargaff's second parity rule
ανά: Pflughaupt, P, κ.ά.
Έκδοση: (2023)

Machine learning model for sequence-driven DNA G-quadruplex formation
ανά: Sahakyan, A, κ.ά.
Έκδοση: (2017)

Machine learning model for sequence-driven DNA G-quadruplex formation
ανά: Aleksandr B. Sahakyan, κ.ά.
Έκδοση: (2017-11-01)

Decoding the Human Genome: Machine Learning Techniques for DNA Sequencing Analysis
ανά: C. Sravani, κ.ά.
Έκδοση: (2023-01-01)

Whole genome experimental maps of DNA G-quadruplexes in multiple species
ανά: Marsico, G, κ.ά.
Έκδοση: (2019)

A Fragile Image Watermarking Scheme in DWT Domain Using Chaotic Sequences and Error-Correcting Codes
ανά: Andy M. Ramos, κ.ά.
Έκδοση: (2023-03-01)

Classification of fragile states based on machine learning
ανά: Li Yuquan, κ.ά.
Έκδοση: (2018-01-01)

BLM prevents instability of structure-forming DNA sequences at common fragile sites.
ανά: Hailong Wang, κ.ά.
Έκδοση: (2018-11-01)

Machine Learning and Safe and Inclusive Architecture for Fragile Users
ανά: Antonio Magarò, κ.ά.
Έκδοση: (2019-06-01)

Prediction of subsequent fragility fractures: application of machine learning
ανά: Mozhdeh Zabihiyeganeh, κ.ά.
Έκδοση: (2024-06-01)

SPLICE: A technique for generating in vitro spliced coding sequences from genomic DNA
ανά: Wayne L. Davies, κ.ά.
Έκδοση: (2007-12-01)

Sequencing of Genomic DNA
ανά: Ulrich Mahlknecht, κ.ά.
Έκδοση: (1999-09-01)

Mitigating Temporal Fragility in the XY Surface Code
ανά: Pei-Kai Tsai, κ.ά.
Έκδοση: (2024-07-01)

Universal Features for the Classification of Coding and Non-Coding DNA Sequences
ανά: Nicolas Carels, κ.ά.
Έκδοση: (2009-06-01)

Universal Features for the Classification of Coding and Non-coding DNA Sequences
ανά: Nicolas Carels, κ.ά.
Έκδοση: (2009-01-01)

Fragile DNA contributes to repeated evolution
ανά: Claudius F. Kratochwil, κ.ά.
Έκδοση: (2019-02-01)

Strand-specific Single-stranded DNA Sequencing (4S-seq) of E. coli genomes
ανά: Takahiro Masuda, κ.ά.
Έκδοση: (2019-08-01)

REPETITIVE DNA SEQUENCES IN THE GENOMES OF PLANTS
ανά: A. B. Shcherban
Έκδοση: (2015-01-01)

DNA watermarks in non-coding regulatory sequences
ανά: Pyka Martin, κ.ά.
Έκδοση: (2009-07-01)

Functions of human non-coding dna sequences
ανά: Stupar Milanko, κ.ά.
Έκδοση: (2011-01-01)

Genome-wide identification of coding and non-coding conserved sequence tags in human and mouse genomes
ανά: Maggi Giorgio P, κ.ά.
Έκδοση: (2008-06-01)

A machine learning approach for accurate and real-time DNA sequence identification
ανά: Yiren Wang, κ.ά.
Έκδοση: (2021-07-01)

Inconsistencies in Neanderthal genomic DNA sequences.
ανά: Jeffrey D Wall, κ.ά.
Έκδοση: (2007-10-01)

A New Method to Convert the DNA Sequence of Human to a QR Code
ανά: Sadoon Abdullah, κ.ά.
Έκδοση: (2019-12-01)

DNA sequence driven machine learning for modelling replication timing
ανά: Ashford, J
Έκδοση: (2023)

A spontaneous ring-opening reaction leads to a repair‐resistant thymine oxidation product in genomic DNA
ανά: Sahakyan, A, κ.ά.
Έκδοση: (2019)

Machine learning for classifying tuberculosis drug-resistance from DNA sequencing data
ανά: Yang, Y, κ.ά.
Έκδοση: (2017)

Machine learning enables detection of early-stage colorectal cancer by whole-genome sequencing of plasma cell-free DNA
ανά: Nathan Wan, κ.ά.
Έκδοση: (2019-08-01)

Seismic Fragility Estimation Based on Machine Learning and Particle Swarm Optimization
ανά: Qingzhao Kong, κ.ά.
Έκδοση: (2024-04-01)

Rapid in vitro splicing of coding sequences from genomic DNA by isothermal recombination reaction-based PCR
ανά: Wenxuan Chen, κ.ά.
Έκδοση: (2016-09-01)

Genetic Code Analysis Toolkit: A novel tool to explore the coding properties of the genetic code and DNA sequences
ανά: K. Kraljić, κ.ά.
Έκδοση: (2018-01-01)

DNA topoisomerases participate in fragility of the oncogene RET.
ανά: Laura W Dillon, κ.ά.
Έκδοση: (2013-01-01)

Cataloging coding sequence variations in human genome databases.
ανά: Hong-Hee Won, κ.ά.
Έκδοση: (2008-01-01)

Machine learning-based detection of immune-mediated diseases from genome-wide cell-free DNA sequencing datasets
ανά: Huiwen Che, κ.ά.
Έκδοση: (2022-09-01)

Towards a Measure of Financial Fragility
ανά: Tsomocos, D, κ.ά.
Έκδοση: (2007)

Towards a measure of financial fragility
ανά: Aspachs, O, κ.ά.
Έκδοση: (2006)

Detecting overlapping coding sequences in virus genomes
ανά: Brown Chris M, κ.ά.
Έκδοση: (2006-02-01)