A coalescent-based method for detecting and estimating recombination from gene sequences.

A coalescent-based method for detecting and estimating recombination from gene sequences.

Determining the amount of recombination in the genealogical history of a sample of genes is important to both evolutionary biology and medical population genetics. However, recurrent mutation can produce patterns of genetic diversity similar to those generated by recombination and can bias estimates...

Bibliográfalaš dieđut
Váldodahkkit:	McVean, G, Awadalla, P, Fearnhead, P
Materiálatiipa:	Journal article
Giella:	English
Almmustuhtton:	2002

Geahča maid

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Recombination rate estimation in the presence of hotspots.
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Linkage Disequilibrium, Recombination and Selection
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Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes.
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What drives recombination hotspots to repeat DNA in humans?
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A common sequence motif associated with recombination hot spots and genome instability in humans.
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Almmustuhtton: (2008)

A common sequence motif associated with recombination hot spots and genome instability in humans.
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Almmustuhtton: (2008)

Approximate likelihood methods for estimating local recombination rates
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Almmustuhtton: (2002)

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Almmustuhtton: (2005)

Recombination Rates, their local variation and the estimated number of hotspots in the human genome.
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Importance sampling on the coalescent with recombination
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Human genome sequence variation and the influence of gene history, mutation and recombination.
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Almmustuhtton: (2007)

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Drive against hotspot motifs in primates implicates the PRDM9 gene in meiotic recombination.
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The influence of mutation, recombination, population history, and selection on patterns of genetic diversity in Neisseria meningitidis.
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THE LIMITATIONS OF VARIANT CALLING ALGORITHMS FOR CLASSICAL HLA GENES FROM WHOLE GENOME SEQUENCE DATA
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Almmustuhtton: (2012)

On recombination-induced multiple and simultaneous coalescent events.
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Almmustuhtton: (2007)

The distribution and causes of meiotic recombination in the human genome.
Dahkki: Myers, S, et al.
Almmustuhtton: (2006)

Deconvolution of multiple infections in Plasmodium falciparum from high throughput sequencing data.
Dahkki: Zhu, S, et al.
Almmustuhtton: (2017)

Recombination-aware phylogeographic inference using the structured coalescent with ancestral recombination.
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Dahkki: Spencer, C, et al.
Almmustuhtton: (2006)

The influence of recombination on human genetic diversity.
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Towards an integrated framework for detection of insertions and deletions of transposable elements in next generation sequencing data
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Dating genomic variants and shared ancestry in population-scale sequencing data.
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Almmustuhtton: (2020-01-01)

Recombination hotspots and population structure in Plasmodium falciparum.
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Accurate Computation of Likelihoods in the Coalescent with Recombination via Parsimony.
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The coalescent with gene conversion.
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