The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies

Next-Generation Sequencing (NGS) technologies are expected to play a crucial role in the surveillance of infectious diseases, with their unprecedented capabilities for the characterisation of genetic information underlying the virulence and antimicrobial resistance (AMR) properties of microorganisms...

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Bibliographic Details
Main Authors:	Angers-Loustau, Alexandre, Petrillo, Mauro, Bengtsson-Palme, Johan, Berendonk, Thomas, Blais, Burton, Chan, Kok Gan, Coque, Teresa M., Hammer, Paul, Heß, Stefanie, Kagkli, Dafni M., Krumbiegel, Carsten, Lanza, Val F., Madec, Jean-Yves, Naas, Thierry, O'Grady, Justin, Paracchini, Valentina, Rossen, John W.A., Ruppé, Etienne, Vamathevan, Jessica, Venturi, Vittorio, Van den Eede, Guy
Format:	Article
Published:	F1000 Research Ltd 2018
Subjects:	Q Science (General) QH Natural history

The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies

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